Array 1 284478-291334 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRJG01000001.1 Bifidobacterium pseudocatenulatum strain AM18-42 AM18-42.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 284478 29 100.0 32 ............................. CACGTTGCCGTTAACTGGCCCCGGATAGTCAA 284539 29 96.6 32 ............................T CCGAGCGTGCCGGGCTGTGAGGCGGTTTTATC 284600 29 100.0 32 ............................. GGCAGCACCAGCACGATGGCCAACAACATCGG 284661 29 100.0 32 ............................. GATGTCACCATCGCGTTCACCGGAGAAATTCC 284722 29 100.0 32 ............................. CTTCTGCGCGGCCACCTTAAGCTCCGGGTGGT 284783 29 100.0 32 ............................. ATCCGAGGGGAGATGGCTCGAAGGGGCATGAC 284844 29 100.0 32 ............................. GATAGTTCGAAACAGGAGCGACGGGCGCGAAC 284905 29 96.6 32 ............................T CGTCCGGCGTATTGGAATCCGGTTGAATGGGA 284966 29 100.0 32 ............................. GGGTGAGCGCGTCGAACATGCGCCCGATGCGA 285027 29 100.0 32 ............................. GAATGGATGGTGGTGGGACGGCATATTGCTCG 285088 29 100.0 32 ............................. TCTCTCCATTATTTTTTTAGGACGGTGATCAT 285149 29 100.0 32 ............................. ACTGCAATGATCAGATTTCGAGCTTGTGGACT 285210 29 100.0 33 ............................. TCAGGTTGGCGTTATGCTCGTTGTGGGGGAGGG 285272 29 100.0 32 ............................. GAATGGCTCCCATGGGGATTGCCTGAACCTTA 285333 29 96.6 32 ............................T TGCTTGTCGGCGGTTTTGGCGAGATTCGTATG 285394 29 100.0 32 ............................. GACTTCCTGCGCCATCCGAAATGCCACGGCCG 285455 29 100.0 32 ............................. ACGCATACGAGCACGCAACAGGACAGTACAGC 285516 29 100.0 32 ............................. CATTGCCGGACGGCAAGGGATTGCCGATTGAT 285577 29 96.6 32 ............................T TCGCCGTTTGCGGCACGCCTTTCGAGGGTTGA 285638 29 96.6 32 ............................T CCAGGTCACGTTTCCGGCTTTTCGTAGCCTTG 285699 29 100.0 32 ............................. AAAACGTTGGACGATTTGGAAAAGCAGGTTGG 285760 29 100.0 32 ............................. TCCCCCCATTCATCGACGAACGAGCGGAAAAA 285821 29 100.0 32 ............................. GACAATTCCAACGCACGCTACACGGATATTAT 285882 29 100.0 32 ............................. GCAGTCCGAAACGCCACCTCCCCCCAGTTCCA 285943 29 96.6 32 ............................A AACCAAATTAGGGACGTTTCTACGGACATCCA 286004 29 100.0 32 ............................. CCATATCTGGAGACCATCGAATGAAACACAAT 286065 29 96.6 32 ............................T TCGCATTCAAAGCCACCGAAGAAAAGGAGCAA 286126 29 100.0 32 ............................. CGTCAATCGAGATTCCAAGATATTGTCCTGTG 286187 29 100.0 32 ............................. GCTCGCATTTCCGTGATGTCGAGGCCGGCTTC 286248 29 100.0 32 ............................. CTGAAAACCTCGTCATGCTCCTCATCCAGCCA 286309 29 100.0 32 ............................. ACTGAAGTGCAGGACAATCCCGATAGGAGAAT 286370 29 100.0 32 ............................. CACAAGGAGAAAACACAATGCATAGGAAATGG 286431 29 96.6 32 ............................T CGGGGTAAGCGACTTCGAGCTAGTGAGGGAGA 286492 29 100.0 32 ............................. CGTCACGGTCGCCTTGCCTTTCGCGTCGAGTG 286553 29 100.0 32 ............................. CGGCGTATACGCGCTGTCGGACTGCACGGTGT 286614 29 96.6 32 ............................T CGAGGAGGATGAATGGCCGGTCTGACGGAAAC 286675 29 100.0 33 ............................. AACCTCAACGGCAGCGAGAAACAGATCGCATGG 286737 29 100.0 32 ............................. AGATCGGCGTAGACGTCCAAAGTCATGGCCGC 286798 29 100.0 32 ............................. GCCGTCCGAAACGCAACCAGCCCCCAGTTTCA 286859 29 100.0 32 ............................. GAGTGGCCGTCCTATATGAGTCGCGGACGTTA 286920 29 100.0 32 ............................. CGGGCCATCATATTGTCCGGGAGGCTGATTCT 286981 29 100.0 32 ............................. GCCTTCCTCTACGCCAGGGACGAGATCAGGAA 287042 29 100.0 32 ............................. AACGCATCCCCATCGACCCACTGCTGCGACTG 287103 29 100.0 32 ............................. GGTACGGTGATCACGTATGAGCCTGAGCAAAT 287164 29 100.0 33 ............................. TGTTGGCCGCGAAATACCGGTACGAGGCGCTGA 287226 29 100.0 32 ............................. GGGCCATCGCAGCAATACTGCATACAGGCGAG 287287 29 100.0 32 ............................. GCGTCGGCGCTCATGGAGCTTGACGGAGTGTT 287348 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287409 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287470 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287531 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287592 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287653 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287714 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287775 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287836 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287897 29 100.0 32 ............................. GATACCCATCTCAACAAGAGCTCCGCCCATGG 287958 29 100.0 32 ............................. TCATCCAAGCCGTCAGCAAGCGTCTTCGAGGC 288019 29 100.0 32 ............................. CGCCTGCCTGCGCTTTCCTCTCGGCTGCTTCG 288080 29 100.0 32 ............................. GACCAGTTGGGCGTGGGACATATTACCCACAC 288141 29 100.0 32 ............................. TACTTGATTGCCACGAACGACTACGATTTCGA 288202 29 100.0 32 ............................. GTCTGAAGTCCGGCACCAGCTTCATCCAGACC 288263 29 100.0 32 ............................. GATTGTTGACCGTGGCGAGTCGTTCCGCAGTT 288324 29 100.0 32 ............................. GTGGCCGATACGCCGCGCCGCTCACTTAAGGA 288385 29 100.0 32 ............................. CCCTTGCTTTGCCGGAACTTCCACCCTCGCAC 288446 29 100.0 32 ............................. AGACTCAAGGCCGTTTTTGGGACATGGACGGC 288507 29 100.0 32 ............................. ACTCGCCACATCTATACGCTAGACCCTAATCA 288568 29 100.0 32 ............................. AATGAGAGCGACGAAAACACCACCCCGCCGCC 288629 29 96.6 32 ............................G TATCGCCGTCGGCCGCGTTGGTGCGAGTCCAG 288690 29 100.0 32 ............................. AAACCGCACGATATCACGGTATGAGGCGTCCC 288751 29 100.0 32 ............................. TCGGCATGAGCGAGAAAACCGTCAGCGAACGT 288812 29 100.0 32 ............................. GGCAAGGGCGCGGCCCAGGTCCGCAAGGACTT 288873 29 100.0 32 ............................. GCCGTCACATGGAATGTGATGCAGCTGGTTCC 288934 29 100.0 32 ............................. AGGGCCGGGAGTTTGGGCATGTCGAGGATATT 288995 29 96.6 32 ............................A CGCATTTCGCCATCCTGAGTGCGGACGTAGAA 289056 29 100.0 32 ............................. GTAGCCAAACTCTCCATCATCGTCACGATGCA 289117 29 100.0 32 ............................. CGCACGGTCAGCCATAGGACGGTCAGAATGTA 289178 29 100.0 32 ............................. GAGACGACGCCCTTGGCCATGCGAGAGATGAG 289239 29 100.0 32 ............................. GGCGACTTCGAATATCCGGGAGCCAACGTCCT 289300 29 100.0 32 ............................. GCGTCCAAGGCCAACAAGGCCATCAACCAGAT 289361 29 96.6 32 ............................A ACAAGACCGAACAGTCCACCGACGAGCATGAG 289422 29 100.0 32 ............................. ATCGACATGATGGTCATCAACTCGCTGGAAGA 289483 29 96.6 32 ............................T GGCCTTGAGTGCGACATGTGCGCCGTTCTTGA 289544 29 100.0 32 ............................. GCGAGTTTTGGCATCACCAATTTTCCAACGTT 289605 29 100.0 32 ............................. TTTGCAGTGACGTTGGCCGCTCCTGCACCGGT 289666 29 96.6 31 ............................G CGAACATCACGCAGAGGCCGGACAGCATGGC 289726 29 100.0 32 ............................. TTTTTGAGATACTTGTAGCGTTCCGGTAGATG 289787 29 100.0 32 ............................. GAGCTCGTAAACTACCTCGGAATCGACAATAG 289848 29 96.6 25 ............................G CGCGAACTTATTGTGCGGGACGGTA Deletion [289902] 289902 29 100.0 32 ............................. AGGCGAACGGCGAGAATATATCTTACATGCTG 289963 29 100.0 32 ............................. GGCCAGGAGGAGATCGCCTTCGCCAACGGCAG 290024 29 100.0 32 ............................. TACGGAAGCGTTTCCGCGCCAATCATCCGGAA 290085 29 96.6 32 ............................T AGTCGTATGTGGCGCATACTTCATCGGCACCA 290146 29 100.0 32 ............................. ACGACGTTCACCACGACACCTGTATCCTTTAA 290207 29 100.0 33 ............................. GCATCATCTCCGGAAATCGGTTGCGCCATCCAA 290269 29 100.0 32 ............................. GGCGGTTGCATGATATGGCGTGCTTTTCGCTT 290330 29 100.0 32 ............................. GCCGTCAACAAAGCGTCTTCAGGGATGGTGAC 290391 29 96.6 32 ............................T CGGGATGATACGGTAGGGGACGTTGACCTTAT 290452 29 100.0 32 ............................. ATGTCTTCTGGAATCGGAATGATACGATAGGG 290513 29 100.0 32 ............................. TCAACGGTACCAGCATGTACTATTTAGACACT 290574 29 100.0 32 ............................. GGGCCGACACCGTTCAGATAGCCGGTGGAAGC 290635 29 100.0 33 ............................. GACAAGGTGGTCTACATGTTCGCCACCAAGCTG 290697 29 100.0 32 ............................. GCGAACGCCGCATCGAATGGCTCCAAGAGCGC 290758 29 100.0 32 ............................. GAGTCTTCGGGCAAGTCTTCGGGGACGCAATC 290819 29 100.0 32 ............................. TGTTCGGCCATTTGGCGGCGTTGTTCTCGATA 290880 29 96.6 32 ............................T GACACCACGTCGGGCGGTCTACTGGACGTTGA 290941 29 100.0 32 ............................. CCATCCCAATCATCCGAGAACCTGACGTTCTG 291002 29 96.6 32 ..A.......................... GCCAGGCATCCGGCGATTCGCCTACCGTCACC 291063 29 100.0 32 ............................. TTCACCAGCTCATTACCGTTCTTGGGGTTACG 291124 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 291306 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 111 29 99.3 33 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTATTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGCCAAAAACACCCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //