Array 1 63863-63524 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSQ01000004.1 Streptomyces spectabilis strain JCM 4308 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 63862 29 100.0 32 ............................. TGGTCCCACGGTGAATCCGGGACCATCTCGAA 63801 29 100.0 32 ............................. GCCGGAACTCCGACCCCCGGAACGAAGTCGGA 63740 29 100.0 32 ............................. GGACATCCGCGGCCCGCTTCGCCTCGCGCTCC 63679 29 100.0 32 ............................. TCGAAGGGGCAGCAGAGCGTGGACACCGTGCT 63618 29 100.0 38 ............................. AGCCCCTTCACCTTCACCTTCACGAAGATGATCGCCGC 63551 28 79.3 0 ....-.............A.....CG.AG | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.5 33 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGAAGTGCCGCTGGTCGGCGCGCGTGTGGCTGGATGTGGGCGTGAAGGGCCCGGCGGGCTTGCGCGCGGGGCGGTGGGGCGCTCCAGCCCAGCGAAAAGGCCCGCGGAGTGACGTTTCCGCAGGCCAGATCGATTCTGCTTCGGTATCCCAGAGGGTAACCGCAACAGCTGCTGAACTCGACCCAGTTGCGACTACGAAGAGTAGCCACCCAGAAGGAACGTCGTGAGCTGCTTGACGCGGTGGCGACAGAAACGCGCCGAGGGGGAACCATCTGCGACACGGGGACACTCCCAGCCCTGCCGATGCCGCCCCAACCAAGGCTCACGCGGACGCGTCTCTACAGTCGGGGCTCCAGCGCGAGTTCGTCGCCTGGATGTTGTAATTGGAGAGGGAATTGCGCTACATGAAGGTGATTTGTTCGCATCAGGATGGAATGCCGCTTTCTCAAGAAGTAAGGGAAAATCCACTGTCGAGCGCGTAGAGCCGCAGGTCGCGGCCT # Right flank : AGCTCATCGAGGCTCTGGGGAGGCTCTGCGCGGCCGCTGCCTTCACTCCTCACCCGTGGAGCGGCGGCCAAGGCGAGCGCCAGGTGTCACGTGGCAGTCAGCCCTGCGGCCGCGGCCAGTTCGCGTACGCCCGGTGTCCGTGGGTGTTTGGTCCGCAGGTCGGAGATGATGGTCCGGATCGCGAGGCGGTCGCGTACCTCGCCCGGCGAGACCCGGGCGGCCGAGAGTAGCTCCGTCGCCGTCTGTTCAGGCTTGCCCCACTGCCACCACGCGCGGCCGAGGTCGGTGTGCAGCCTGGCTTTGCGCTCGGGCGTCCTGAAGTGGCCGGGGTGCAGGCCACGACCCACGTCGAGAGCCGTACCCGCGTCGCCGAGTGCCCAGTGCACGCCGACCGCGTACAGGTCGACGGCGGCCGGCGTAAGGGGGAACAGTCGCTCGGCCGGAGACTCGTCGGGGAGGCTGCGGGCGGCGCGGCGGGCCTCTGTGATCATGACGAGGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69910-69210 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSQ01000008.1 Streptomyces spectabilis strain JCM 4308 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69909 29 100.0 32 ............................. GCCGCCGCAGTGACGCCCCACGAGCCGATGTC 69848 29 100.0 32 ............................. AACAGCACCATTCTTTCGTCCTGTTGCGCATT 69787 29 100.0 32 ............................. GCCTCCCCGCGTTTCCGCCGCCGCGGCGGGCC 69726 29 100.0 32 ............................. CCTGACGCTGGCCCAGGTGCTGGACCGGGCGG 69665 29 100.0 32 ............................. GTCGACTTCGCAGGGAAGCCGCGAAGACCGTC 69604 29 100.0 32 ............................. AGGGCGACACGGTTCACCGCGGTGGTCACCTC 69543 29 100.0 32 ............................. CTCGCCGCCATCGAGGAGGCCTACCGCGCGGT 69482 29 100.0 32 ............................. GTGCTCGTCTCTGGTGATCGCGCGATGTGCCG 69421 29 100.0 32 ............................. AGAGCAATCGTCCCGCGGTGGGCGGCGCGGAC 69360 29 100.0 32 ............................. CAGCGCACCGTGTGGCCGCCGGGGGCGTTGTA 69299 29 96.6 32 ........................A.... GTCGCTCCGCCGCCGCGGGCCAGTTCATCCCA 69238 29 89.7 0 ..........T..T.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GAGCGCGTTCTCTCCGAGCCGGATCAACTCCGCGTCTCTGTCGTCCAGGCCCGCCGCCCGGCACGCGGCAGTCATCACCCGCGTCGCCCCCGCCTCCATGAACCCCTTCTCCGACCCCTGACCAGCGTCAGCCGCCATGCCCGAACCAGCTCCCCTAGTCGCGCGCGATCAACTGGCGCCACGCCCACGGGTGACCAACCCGACGCCCGCCAGACGCGTCATCGACCGTACAGACCACACCACTTGGCCACGAGGGGGCGCCAAGACGACAAGCTGCTGCGAAACGGCCCCATAGCCGCTTGCCTTGGCCACTGCCGCGGCCATCTAGACCGCCTAACATCGACAGCAACCAAGGCTGCACCAGCCCCTGAGACAAGCGACCACCAACCGCCGTCGCATTAACGACTGTACGCATTCGCCATCGAATGACCCCAATGCCGCTATCTCAAGAAGTGAGTCAGAACTCCCCAGTCGCCTGACAAACCCCCAGGTCACCGCCT # Right flank : GAGCTGAGCGGCGAGCACAGCGAACCCGACTCGTGGTCCCCGCGCATACGGGCCCCCCAAGCCACACCCCGCCACACCGCCGAGCCCCGCGCCAAGACATCGGCGCGGGGCTCGCGGAAAGAGGTCGGGAGGCGTCAGGCGTTAGCCGGTACCACGTCCGGCTCGTCGATCGGCGAAGCCGAGGCGTGCTCGTACGCCTCCCGGTCGAGGATGTTCTCGCGCGCCGCGACCAGGACCGGGACCAGGGCCTGGCCCGCGACGTTCGTGGCCGTGCGCATCATGTCGAGCACCGGGTCGATGGCGAGCAGCAGGCCGACGCCCTCCATCGGCAGGCCGAGCGTGGACAGGGTCAGGGTCAGCATGACCGTGGCGCCGGTGAGGCCTGCGGTGGCGGCGGAGCCGACGACCGAGACGAAGGCGATCAGGAGGTACTCCTTGATGCCCATGTTCACGTCGAAGATCTGCGCGACGAAGATCGCGGCGATCGCCGGGTAGATCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71977-71338 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSQ01000008.1 Streptomyces spectabilis strain JCM 4308 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71976 29 100.0 32 ............................. CCCGGCTTGCCCGTGAACGTCACAGGCCAGGT 71915 29 100.0 32 ............................. ATCACGGGGATGCCGTACGGATACTGCACCTC 71854 29 93.1 32 .....................A......T GCGGCGAGCAGGACGCGGTGAAGCGTGTGCTG 71793 29 96.6 32 .....................A....... TGGACCCGCAGCTCAGCCACGGGGTGTGCGCT 71732 29 96.6 32 .....................A....... AGCCGAGCGCATGCAGCCCGCGAGCAGTTCAG 71671 29 93.1 32 ...A................A........ TCCTCGCCCTCCTCGATCGGGTTCAGGCTCAT 71610 29 100.0 32 ............................. TCGACCTGCCACTGGCCGCTGCTGGGGTACGC 71549 29 100.0 32 ............................. ATCTGGCCGCAGACCGCGAAGTGACTGCCGGG 71488 29 96.6 32 ..............G.............. CTGATCCCCCAGGTGCTCGCGCTCCGGGAAGG 71427 29 100.0 32 ............................. GGGCAGGTCGGCGGCGAGTACTCCTCCCCCGG 71366 29 93.1 0 .....................A...A... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : AGCACGGACCCCCAGTACGCGCGCACCCTAGGCTTCTGCCGCATGGTCCTAGCCCAAAGCCAGCTAATGAGCGGCGAATTGGAGGCCGCCATCACAACAGCAAGCCTGGCGGTTGAGGCAGGCGACACCCTGCAGTCCTCTCGCTTCCAGCGATACGTCACCGACTTCCAGACAGAGGTGAGCGAGCACTCAGGCAACCCATCCGTTGCAGCCTTCAGTGAAAAAGTTCGCAACGCACTCGCTCGCTTGGACGACGACTGAGCCTCCACAGAGACGCCCAGCGCGGCTCGCCATCGCCACAGCTGAACAGCAATGGTTTTACTGTCGAGTTGGCCAGAAAGACGTAGCCTCATCGAGTCGTAAGGCTGCACCACCACAGCCCCCGCGCTAGCTCCGAACCGTGAGGTAATGGATGATTCACTCCAAATACTCGCAATGCCCGAGTCTCAAGAAGTGAGTAAAACCGCCCACCCGCCTGACGAACCCCCAGGTCACAGCCT # Right flank : ATAGTGGCCTCTCCCCCCTGGCCGAGGTTGAAGTGGCTCCCACGCATACGCGGTGGCTCCTTCGCGACAGCCCTAGCCTCTACACCCGGAGTGCGGATCCCACCGCGTGCCCATACCTCGCCAAGGGGTACGCCACACCGCCGTAGCCCTACCAGGGCCGCCAATCCCGAGGCCCATCGTCATCCCGCAGTGCCGCGATCCGGCGCCGGTACTCGTCCGCCACCCGCTCACTCACCCGCACGTTCTGCATGAGCCACGTCGTCATGTTGAACTCCTGCAGCCCGCGGAGCGTCGCGTAGCCCTCCCAGTCGTACAGGTCCCGCCCGTACGCGCCCACGAAGTCGGCGTACTGCTGCTCGGTCTGCCAGCCGAGGCTGTGGTGTTCCACGGACGTGACCATCAGGTCCCACTCCGGGTGGTCGAAGCAGAAGACTTCGAAGTCGATCAGGATCACGCGGCCTTGGACGTCCACCATGAGGTTCTGGACGTGGGCATCCCCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //