Array 1 12168-11910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000192.1 Tolypothrix sp. LEGE 11397 NODE_192_length_18354_cov_36.9805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12167 37 97.3 36 ..................C.................. ACCCAGTAACGCTTCATCTTCTCTCACATACTGTGT 12094 37 100.0 37 ..................................... CTTTCAAAGCAGGTGTAGAATTCATCGCAACATGCTG 12020 37 100.0 37 ..................................... TTGTCCCTAGAAATGTGTTTGTGATTATAAAAAATCG 11946 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 37 CTTTCAACCCGCCTCAAGTCGTGAGGGGTATTGAAAC # Left flank : CCTGTTACCGACTTCTGCAAGCAGTCCATTTCAGCTAGAGAAGTGCGATCGCCAACTCATCTGCAAATTTTATCCTCGGCGTGTTATAATCGAAAAGATTAAGGGCGCGTGGCTCAGTGGATAGAGCAACAGATTCCGGTTCTGTGGGTCGGGGGTTCAAATCCCTCCGCGCTCGTTTTGTGTCGATTGCCAAATTATTTGTCCGTGTTGACAAATTAATGTCCATATTGCCAAATTACTGTCCGCGTTGACAAATTATATTTGACAGCAATTTTCTGCCGTATATCAAGTATGGCAGAACTCTTCTTTATATGGAGCGACTAATTAGTATTTAATATTTAGAGCAAAAGTCAATCTCTCGAAACAAAGAATCTGTTGCTCTATCCTTTCAACCCACCTAAAAACTTTTTGCTCAGTGCCAACCCTTGAAAATAGTCAACTGCTCACTCTTGTGGCGTTACATATTTGCGGTTTGTATTACCTCTCAACTCAGTAAAGGA # Right flank : TCAGCGCCTCAAATCCTTCACCAGCAAAGACTTCCAGAAGCATTTTTGTCAGATCTGCCAAAATCGCCTGTCTGTTAACACTTAAAAAAGTAAATTAACTGACATCATAAAAGCTACGAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATCTCCAGGGAAATTGACCCCGCTTCGATTCGTCAAAAAAATAATTAAGGTGGGTTCCTCCTTGGTTGGAGGTGATTATGTAGCTACCACTGCGGTAAACCCGCACCTCTTTGCTGGGGGCGCACCTTATTCCTGTCTTTAAGGGACAGCAGCTTCAAGGTTGGTAGAACGACTACAGGGCCAGAAAGCAAGACTGTCTTCCAACAGTCAAACTAACCCACATTTACACAGTACAGAGGCTTTATACAAGCATGAACTGCGGCGCTATTTATTGATATTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGGTTTTTTGGCGATAATTGTAAGCAGCGATCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGTCGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 12527-11965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000010.1 Tolypothrix sp. LEGE 11397 NODE_10_length_106269_cov_38.5121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 12526 36 100.0 47 .................................... AACATAGCTACCTAGGCAGACTCTCTTTATCCTGTTATAGTCGGCAG 12443 36 100.0 38 .................................... CTACGTCCCAATCCCATTTGCAGAGCATAGGGTGCTGG 12369 36 100.0 36 .................................... GGTGACTGGGGTATTGCTAAACACTGGTCTAAGATT 12297 36 100.0 37 .................................... TGGATATCACCGTCGAAGCCTTCGGTTTCTTCAAGTA 12224 36 100.0 39 .................................... CCGATTTGTGCATGAACAGCTTCCTTCCAAGCTTGAACG 12149 36 94.4 36 .............T......A............... ATATCGCTGTATATCCAACAAGCGGTATCGGACTTA 12077 36 97.2 38 ....T............................... CCAGCAGTATGACCAATTACTTTAGTTTTATCTGTACT 12003 36 86.1 0 .............T.C.....T........T....T | G,TA [11967,11970] ========== ====== ====== ====== ==================================== =============================================== ================== 8 36 97.2 39 GTTACGCTTACACCTACCCCGCAAGGGGATGGAAAC # Left flank : GTTAACAGAGAAGGAACCGAAAAAAGCCAGTTCTTTGCAAGAAGGACAGATGGTTAAGGTAAAAATTGTGTCTCTCAAAGAAGATGGCAGCATTAAAAGTGTAAAGTGTGTAAGTTAACTCAGTATTTGAGCTTAAAGTTTTTTATAGGTAAAGCTTGACGAAGATAAGTTATTGAATTAAGTTATTTACATTGCAAAGTTACTGTAAAGTCCTCAGTGCTTTCTCTAGCTTTTTTAGACCACAGAACCTTGAAAATTCAATAAATATATTGTGTTTCTGGGGTAGATTTCCATACTACCCTGGACAGGAAAAAGCGGTTTTGCGGCCGATCCGCCAAATCGCTGAAACCCTAATTTTTTCGTGGAATCGGCCGTTCGCTTATCCTGTAAGGCTTTCAGAGATTTTTTCTGGATATTTTGCTGGCGGAAAAGCAATAAAATTAGTATCGGCCGCAAACCGCCTCTAGAAGCTATATAGGATAAGGGTTTCAAATCGAGGG # Right flank : TATTCACCCATACACTCAGGTTTGAAAAGAGCGATCGCTTTTTCTGAGAATGATTATTTTTCGCATCAAAGATTCAGCCAACCAGACTGCAACAATGCGATTCGGCAAAGTTTGCAACTAACATGAATTGGAAGGATAAATTTTACACTAAAAAGTCAAAAAAACTAATTTATTTTTAATTCATAAATAAATTCTCTTTGAAACAGAAAAATAATCACCACTAATATTGAGCGATTGTTTTACAATCTGTAATATTTTGCTGATTCCCTTGAAAATAAACAATTTCAGCAATTACAGACTGCGTAAAAACCTAATTTTTGCTTTACATAACTCAACAATTGTAGAGTTAATAACTAATTACGAATTATGTTGAAATTGATCCCTATTTATTTTTAATTCAATGTCCAATGCCTGGAAATTACATAAATATCAATACCACAAGAGATAACATTTTAAACTCATATCAATTCTTGATGGATCTGCATAGAATCAGATCCCCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGCTTACACCTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 5061-5240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000227.1 Tolypothrix sp. LEGE 11397 NODE_227_length_14181_cov_36.667, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 5061 28 100.0 50 ............................ AGGAGACGTTTTTAGTTTCGTCACGCAGAATCGTGGTGCTTAAGTTTCCA 5139 28 100.0 46 ............................ TGGGAAAATATAGGTTAAGTCTGCTTGAATCATTGCCTTGTTTCCA 5213 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================== ================== 3 28 100.0 48 TCCCCGTTAGGGGTAATGATTTGAAAAC # Left flank : ACTTTGTGCGTAAACCCTTGCGGGCAAATATCATTTTTGACAAGATGGCGGAACACTTAGGTGTGCGCTACGTTTACGCCCAAGAAGCGAACCAACAGCAAAATATAGAAATTGGTTCTACTAATAGTGCATCCACCCCAACCAACTCATTAACAGTTGCAGACTTAGAACTGATGCCGAGAGAATGGATAGAACAACTGCATCAAGCCGCGCTAAGAGTTAATAGCAAAGAAGTATTGAGATTAATTGAGCAAATTCCACAAAAGAGCGATCGCCTTGCCAAAGCCTTAACTGATTTAGTTGATCGCTTTGGTTTTGAAGAGATGATCGAATTAACCAAGCAGCAGCAGCAGGCGGTTAAAAAACCCGTTTAATGTGCAAAAAACTGATCGCTGGGATATCAACATTTTTCTATCACATTTAGTAGTTGGGTAGGGTGTGTTATCGCGCCAGCGTAACGCACCGTCAAATATTTGCTGAGTTTTTCATGGCTGTTTTAG # Right flank : CCCTACCTTTCTAGAAGCTTTACCCAGAAAGGGTTACAGATACCCATTTTCGCGGGGGGTCTAATTTGCTTGTCAACAAGCATAAATTATTGACAATTAGACATAGTTGGAGGTAGTTCAAACTTATACCCAGCAAGGCTTTCGCGGGGGTCAACGAAAGAATAAGAGTGTTCCAAAAAATAAACGATCCAAAACCTGTCATTGCGAGCGAAACGGAGTGTAGCGTTCGCGTAGCGTCTCGCAGAGAAGCAATCGCAAAATCTTGCAACTACGAGCGAGTCTATGCGATTGCTACCCTGCGGGAACGCTACGCGAACATTCCGCTTTGCTCCATTCGCAATGACAATTGAGCATTTTTTTACTTGGAGTACTCTAAGGGTTTCAGAGATTAGCCTACCCCCGCGAAAAATTTAAGTGTCAATAGTTAAAATAAACACTATTGTTTTCAACGGGAAACTTGATATTCAGTTTTCAAGGTGCTGTGTGGATTAGGGCATAGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGTTAGGGGTAATGATTTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 6800-6616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000227.1 Tolypothrix sp. LEGE 11397 NODE_227_length_14181_cov_36.667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 6799 35 94.3 41 ....TT............................. TATCGCTCTCACGCAGCAAAGTACCACCCCAAAAAATTTAG 6723 35 100.0 38 ................................... CGAAGATTGCGAAAAGAAAGCAATCTTTGTTTTTCAAA 6650 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 98.1 40 GTTTCCATCCCCGTGAGGGGTGAAGGAATTAAAAC # Left flank : GATTTCGCCCTCACCCCCAGCCCCTCTCCCACAGGGAGAAGGGAGCAAGAGATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACGCCCGCCCTATATCGCTTTTAGCTGAAGTTCATTGGTGTCAACTGAACGTGAAACCCGCTCTTGTGCAAGGTTTCGCCCTCACCCCCAGCCCCTCTCCCACAGGGAGAAGGGAGCAAGAGATTTGATTTAGTTCCCCTTCTCCCCCAGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACGCCCACCCTATATCGCTTTTAGCTGAAGTTGACACCTGTGGGCAGTGCCTCGCCCCTACAATCTGTCGCATTCTTTTTTCAAATTGGCATTACTTAAGCAAAAGTTGCAGCTCAGATACCCGACTTTTTGAAAAAGTCGGGTATCTAAATCTCGCTAAAGTACGTGAAATTCAACCCTACTGCTAATTTTCAA # Right flank : CCTAGCATTTTCAAAGCCTGATACAGAGAGGGTTAGAGATAGCCATTTTAGCGGGGGGTCTAATTAACCTGTCAATAAGCTGAAATTATTGAGAATAAACCACTAGTAGAGGCTATTCAAAACCTTACTGGGTAAGCTTTTCGCGGGTGTCAACGAAAGAATCAGGGTTTCAGAGATTAGCCTACCCCCGCGAAAAATTTGCGTACACCAAGCTAAAATAGGTACTTTGCAATTCAATAGGAAACGTAAGATTAAGTTTTCAAGGTGCTGTTTTTGGTTGCGGATAGTATAACAAATTACTCTGATTTTTCCTAGCGTCAATAAGCAACTTAGGGATTTCCAAGAAATAAATTATTCCATCTTGTGGGGCGGGCATCTTGCCTGCCACATAAACTGGGCGGACAAGATGTCCACCCCACAATAAATAATGGGATATTTTTTTATTTGGAAGTCCCTTAATATAAGTTTTCTTGCCTACTGCAAATTATTGTTGTGTATCT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 1989-1384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000116.1 Tolypothrix sp. LEGE 11397 NODE_116_length_26565_cov_38.2441, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================================================================================================================================================================================================================== ================== 1988 35 97.1 243 ............T...................... GAGGGAAGCGAATGCCCATTGGTGTCAACTTAACGTGAAACCCGCTTGGCGACAAGGTTCTGCCCTCACCCCCAGCCCCTCTCCCACCAGGAGAGGGGAGTAAGAAATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACACGCGCCGTATATAGCTTTAAGCTTAAGTTGACACATATGGCGAATGCCTCCCCCCTATCCCTATAAGTATG 1710 35 100.0 41 ................................... AAAATCAAAGGTAATCCATGCTTGCCTTTGATTAAGTCGAC 1634 35 100.0 38 ................................... TACTCCAATTCTTTTTTGGTTTATTTATTTACACAACA 1561 35 100.0 37 ................................... ATTACAGTTATTAAAACTGCTAAAGCAGTTAATAACA 1489 35 100.0 36 ................................... TTTATACAATTGGTATGCAACAGGCACAAGCGACAG 1418 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================================================================================================================================================================================================================================== ================== 6 35 99.5 79 GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAAC # Left flank : ACTTCCTTCCCCCTATACAAGCCCAATGTATAAGGATTTGGCGGCAAAATACGCCATTATTGGTGGCGCTGCTGGTTTGCTGATTGGCTCCAGTCAAGAAATGGTTCGCGAACTCAAGCAAGAACGAGATGCAGAAGAAGAATTACTGCGAGATTTAGATAAAGCTATTCGCTCTAGTACAAATAAAGAAAAGTAACGACAGATATCAATACTTGTGGGTTAAGGGAACAGGGGAATGGTTCAAGGGAAAGAAAAAACCTTTAACCCTTAACCTTTACCCCAAAACCAATTTTGAATTCAAATCGCTTAACCGAGCAGTATTAGGACAGATATATGTGTGAGTCCTTGCAATCATCAGTACCACGGAAATAGCTATACCAAATATCTCAATGCTTTTTAGGAAGTGTTCAAATTTGAATACTTCATTTTTTTATATCAAATACTCGACAGGGTGACAAAGAAGTTACAAAGCAGACAGGATAATGTGCATATAACTGCTA # Right flank : CCTACCCTTTTAGAACGCTTGCTATGACTGGGTTTGAAAGTGTCATTTTAGCGGGGGGTCTAATTTTACTATCAATAAGCATACTTTACTGACAATAAGCCACCACGACAAGCATCTTAAAGCCTTACTCAGTAAGCGATTAGCGGGGGTCAACGAAAGAATAAGGGTTTCCAGCATTGGCATACCCCCGCTAAAAATTTGCGTGTGAAAGGTAAAAGCTAATACTTTAACTTTCACTAGGAAACGTTATATTAAGTTTTCGAGGTACTGTAATGTTGAGTAATAGTATAACAAAACACTTAGAATTTTGAAAGCCGAAAACATTAACTTTTCAGTATTACAGACAAACCAAAAGCCAAAACAATAATAAAAGTTAGCATATCAATTAAGAGCGATCGCTCCGCTAAAGCCTTCTCTTTGCTACGCAACGCTAGGGCGAACGGCTAACGTACTTTTAGCAAATCTCTGATAGTTTTGGCTACACAGTGATGATGGTGTTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 9678-9857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000279.1 Tolypothrix sp. LEGE 11397 NODE_279_length_10010_cov_35.6306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9678 37 100.0 34 ..................................... TTTGAATAATACACTACCCCAATAATACAGCAAA 9749 37 100.0 35 ..................................... CCCCGCAAATATCTGGGGGCATCAGAGCAGGTACA 9821 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 ATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Left flank : GTTATTGTCATGCTCTTTAAAAGCGTGAATGCCTAATTGCTGGTCGTTAGAGTTTGCCCTTTCCAATGTATACCAGATAGACTATGACAAAAATTTTATGACATTGACAAGACAAATACAGCAAGTTGCAACTTGGTGAGGTACGGCTATACAATTTCAATGCTTAACAGCTTATCGGGTGGAAATAGTGCTGATTTTTGCGAGTGCGATCGCCTATCAAATGCTTAAAGCGTTTGTTAAAGTTGAAATGCAAAAGATTTTTTAGCTCAATGCGCGGATGGGTAGGTGTAGAAAATCTCGCCGTTGAACAAATAGTTGTATTCCTTATAGGACAGTCTGTTGGATAAAAATTAAATTAAAACTATCCGCGCACCTTACCCAGACTTAGTTTCAGCATTTTTTAAAAAATTAATTGACATTTTTATGTGTTATGATTAGCCCATCCGCGAAACTGAACCTTGAAAACCAAATAGAGACTAGCTTTCCGGCTTCTGCCGCTT # Right flank : TAAAGCAGAACTCCACCACATCATATTTACCAAAAAATTGGGTCTAAAGCCCCGTGCTTCTAGCACGGCTTTTCTTCAACTTCCGGATCATCTCTCTAAGTACGTCATTTTGAGTGCGATCTGTTTCTTCGCAGTATTTCAAAAGCGTTTCAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 5798-5105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000297.1 Tolypothrix sp. LEGE 11397 NODE_297_length_8659_cov_35.1814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5797 37 97.3 35 ............T........................ CATAAGTTATTGGGGCAACTATACTTGGCAGAAGC 5725 37 100.0 40 ..................................... ATTTGGCGCTTACGCCGCAGGAGTGATACTACTATGAAAC 5648 37 100.0 36 ..................................... GGGAACGAAACCAACTCCGAATTCTCCATTAGGAAA 5575 37 100.0 34 ..................................... TCTATCAAACCTATAACCATATATTCAGCAGGAA 5504 37 100.0 37 ..................................... TCGGTGAAACTTAGCCCAATGCTTCTGAAATCTATTA 5430 37 100.0 34 ..................................... CATCACTAATAGATTTAGCTAGTTTGGAATTTTT 5359 37 100.0 36 ..................................... TATCAAAACCTTGTGTAGCTACAGGATTAACTGAAT 5286 37 100.0 37 ..................................... CACATGGATGCTCAAGTGAAATGTTCTAAAGGCGGAG 5212 37 100.0 34 ..................................... GCGTAAGATTCTTTTTCTATATGTACATCTTTAA 5141 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.7 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : GTATCTTAGTTAAGTCCTAGGAGTAGAAATTCTCATTTACTCATCTTGACAAAGATAATATTATTCAGCCATAATTAGAAACGCGTATTCCGGGGTTATAGCTCAGTTGGTAGAGCACTTCAATGGCATTGAAGGGGTCAGCGGTTCGAATCCGCTTAGCTCCATCTGTACATTAAATATTTATTGTCAGGTTTAAAGAATTATTGTCCATTTTGACGTAGTTAAGGGACATAAGTAACCTGTTTTCTTGACTTTCAGTACTCAAACCAGTTTTAAATAATTATTGTCCAGAGTTGAAACCAGTTTTAAATAATTATTGTCCAAAATTAAGTTAAGTTTCTCGCTAGATACATTGACTCTAAATGTATCTAGAGATCTATGGGATCAACTGCACAGTTTTAGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTTTACAATAGAACACATAATAGTGAAATTGCTGAAAACATAGCGATAAAAT # Right flank : CCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCTCCTGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGAGGTATTGATGTCCTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGGAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGGCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACGCTTAGATGAACGCACAGGTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 1 33266-34229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000036.1 Tolypothrix sp. LEGE 11397 NODE_36_length_53782_cov_36.8138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 33266 37 100.0 32 ..................................... AAGTATGGCACTATAGTAAGCAAGGCTATTAG 33335 37 100.0 32 ..................................... GCATTGTTCCAAATATTCAATCAGAATTGTAC 33404 37 100.0 34 ..................................... ATAGCACCAGAGCCACACGTACTCAGGGACAGAG 33475 37 100.0 33 ..................................... TAATTTCAAAAAGTAAAATACATGTATTCATAA 33545 37 100.0 34 ..................................... TAATGTTTTTATAATCACTTCTTAGCCTGTTGTA 33616 37 100.0 36 ..................................... GATGGACAAGTTAAAGCAGAACTACCATCAAAAAAA 33689 37 100.0 35 ..................................... TTTGTGGTGGGATGTATAGTAGCCATTCTTTACAG 33761 37 100.0 35 ..................................... TTTTTTGTTGCCTAAATTAGACTAATTTTGAAAAG 33833 37 100.0 34 ..................................... CTGGATGACTTCGACTTGCAGTGGACAGAGCGTT 33904 37 100.0 34 ..................................... TGCTGGGCGATCGCTTCGATTTCATTGATACCAT 33975 37 100.0 37 ..................................... CAGAAGCGCTCACCTTCTGGTTCCGAAACAAACCACC 34049 37 100.0 35 ..................................... ATCCCGAAACCTATGCCTTGATTTTGTACTGTGGC 34121 37 100.0 35 ..................................... CGACTTTACACAGATATTCTTAATGGTACATGCCA 34193 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 34 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGCACAATCGGAAGTTATGCCGCAGGAATTTGCCAAGCTCATAGTGCCAACACTGTTGGTAGCTGGAGAGTATGACAAGATTATTCCTGCTGAGATGGGGCGACAAGCAGCCACAATGAATAACAAAGTTGAATTTGCGTTGATTCCTGACACAGCACATTTTCCTATGTTAGAAGATGCTCCAACTTACCTACAGCGAGTGCGGGAGTTTTTGCAAATTCCCACAAAAGTTGATTAAAGTTGATGTCCAATCCGACGATTTTGGTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAACGGCATTTATATATAAATCGCTGAAACTCCTTATATGTAAGAATTTCAAAGATTAATTGCTGTTCTATCATCCGCGCTCCTTACGCAGACTGGCTTTCAGCGATTTTGGTTTTGCTTTTTCTCTATTGCCTATGTTATGATTGACCTATCCGCGCACCAGAACCTTGAAAACCTTATATTGCTTGACTTTCAGGCTTCCGCT # Right flank : CGACATCAGAACTGGCATAAATGCTGATACGACAAACAGTAAACCTTAAATTGTAGTGGACTGACACGCCTACAATGAGGCATTAGATTTGATTAAATTAACCGCAGATAAACGCCGATAAACGCCGATGAATTTTTGCTATTGCATCAAATTAGCTGTGTCAGTCCAGTAGGATGCGTTAGCGATAGGGTAACGCATCGAGAAAGATGGTGCGTTACGGCTAATTATTACTCTCTTAAGTTCCGAAATCCTTGCACAGCCGTAACACACCCTACTTAATATTTACTTTATAAGTAGCCTCTTAATCCTTATTAGGGATTGAAATATAATTTATTCAACTTAAAATTGCTGTAAGTTTGGTTGAGAAATAAAATTTAAATTATTCTCAATTTCTCAATTCCTGCTTTTTTAAAACCGTATCTAACCAAACTAAATTTTCTGCTGACACCGCAGGTACAGGTTCTTGATTATAGTCAATCACTAAATCATAGTTACCTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 33906-34819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000041.1 Tolypothrix sp. LEGE 11397 NODE_41_length_49602_cov_37.2607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 33906 36 100.0 40 .................................... AAAAAAGGTTTTCCTTTTTGTTTAAATGCAAGAGGGAGTA 33982 36 100.0 35 .................................... ACCTAGATAACCCCCTGAAGCTGTTGATGCTAAAA 34053 36 100.0 37 .................................... TATTTGGTGTATTTTGATTAATTTCATTTACAACCAA 34126 36 100.0 35 .................................... CCTTCAGGGGTTACGGAAGCCTGTGCGTTTCCAAT 34197 36 100.0 36 .................................... TTTATAATGCAAAGCATTCATAAGACGCATTTCTAT 34269 36 94.4 42 ...G..G............................. GTGTAAGTCTTGAGGAAATCCAAACCTTGATAGAGCATGAAC 34347 36 94.4 41 ...G..G............................. CCCTGCTCATGATTGGTCAAGACCCGCAGAATGTCGTGGTC 34424 36 94.4 38 ...G..G............................. TTTGAATAACAGGCCTATTCGCAAGCCATTGAAGGCAA 34498 36 91.7 35 ......G.......A......C.............. CCGATCAGTTGCCGTCACGGTAACAGTTTGAGGCC 34569 36 94.4 34 ......G..............C.............. CCTGCTTTCCAAATGGTCATCTTCGCGCAGATGT 34639 36 94.4 37 ..............A.T................... TGGATAGCGTTCTGATCTCCCCAAGCGCCGCCATCAC 34712 36 86.1 35 ......G...G.A........C.....A........ CGACGAATTGCCCAGCGCAGTTGAATTTCTATTTG 34783 36 80.6 0 ......G.....A..A.....C........AA...T | G [34787] ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 94.6 37 CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTAGCAAACAAAAGTAGATATTGCTTTCTCCAAAGTTGCTTGTGCTTTCTTCTTTGACTGTATTTAGCCAGCAAAAGTAGATATTGCTTTCTCCAAAGCTGCTTTTACTTTCTCATTTCAGTATATTCAGCAAGCAAAAGCAGATATTGCTTTCTCCAAAGCAGCTTTTACTTTCTCATTTCAGTGTATTTCGCAAGCAAAAGCAATTATTGCTCAAAATCCACCAGTGAGATTTATGTAACAATTAAGTAATAAATTTGACTAAAAATCGGCAAAAGTTGTATTTTAAGGATAGTTTGTGTCCTTCATCGACACCACTCGCCCGCACCTTGAAAACCGCATAACTTCTTTGACTGGTGTCGATTGCCTACGCAGCAAAGCTTTCAGGCTTTGACAGCTTGAGTTTATTGAGAATTTTTCGGAGCTATTGACACTCAAAAAAGTGGTGTCGATTGAGGGGTCTCAAATCCTCTCCTGGCAAGGTTTCCAAAAGTGAACT # Right flank : TCTATTAGTAGTAGGTGCAGTCACAGGAAAAGCATTCTCTAGGCGATCGCATCACCTTGTAAGGGCAGAGAAAAAGTGAAGATAAGCAGTGCGATCGCATATCCTCAAGCAAACATTGCCGTCCAGATCCCCGACTTTTTCAAAAAATTGGGTATCTAAATCCCGCGTCAATCCTCAGTGGTGCGTTATACTGCAGGCTGACGCACCTACCGCTTTGTGATTTGTCCTTTGTCAAAAAATGACCAATGACCAATGACAAAATGAAATTTTTCCGGATTTGAATTCAGGAAAATAGAGATCCTGATTTGATTTATACTTTTAGATTCGTCTGATTATCGAAAAGCTTGAAAGTTGTATGTCCAGCCCCAGTCCCGACACAGTTCGCGTTTATTTGCAAGAAATTGGTCAGTATCCCTTGTTAACAGCAGACCAAGAGATTGCTTATGGTAGGCAGGTACAGCAAATGATGGCCATCGAGCAACAAAAAGAAACGCTCCGCC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTGACGATCACCTCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 11446-12194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000043.1 Tolypothrix sp. LEGE 11397 NODE_43_length_46899_cov_37.4405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11446 37 100.0 33 ..................................... TGCCAACAAAGAATGAATTAATTTTTCTCTGAG 11516 37 100.0 33 ..................................... AGGCATTGCCGATGGTGGGACTTATGCAAGTGG 11586 37 100.0 34 ..................................... TCCTTAGCTTTTCCCTTAGCTGCTTTGGTGCTTG 11657 37 100.0 32 ..................................... GGAAGATGCTAAGAAACGCGGGGCATCTAATT 11726 37 100.0 33 ..................................... ATCTCGTAGCTGATACTAAGCTAGCTATTTTAG 11796 37 100.0 37 ..................................... AAGATGGGCAGGAGTATTTACATGATGCTGGCGTGAC 11870 37 100.0 36 ..................................... GGGGTTTTGATTTCAGCTTGAACTTCTTGCTTTTCG 11943 37 100.0 36 ..................................... GATTTAGAAGCAGCTTCAGCTTTAACAATTGCTTGT 12016 37 100.0 33 ..................................... TTGAACCCAGGGCCAGAAGCCGAGTAACTGCTA 12086 37 100.0 35 ..................................... CACTAAGCACCAAGCATAGGGGAATTTAGCATTAT 12158 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 34 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GAAGATATGGCAGTGGAATTACCCCTACTAAACACGCTGTACCTCTCAATCATGAGAGTTCTACTAATCCAGGTATCCAAGATAGCACTACCAATCAGCCGAGAATATCTTCTTCCCGCAAGCAGCCTTCTAACCTGATTAATCGCATCATGCGTTCATTTACCAAACCCAAAGGTGTTAAAAAGAGAAGAAGAAATTAAATTCCATCTTGTTGCAAACTTGGTAAAGTATAATCTGTCAGCAAACCAGTTAGCATACTCTTGCTTCCCAGAATGCGCGGATGGGTAGGTGTGGAAAATGTAGTCTCACTCAAAATAGGCGAAACCATTTGTGCATAAGACTTGCACCTATTTATTGATGTTCAACCACCCGCGCGCCTTACATAGAAAGACTTTCAGCTATTTTGGTTTTGCCTTTTTGCGATCGCCTATGTTATCATTGCTCCATCCGCGTAACAGAACCTTGAAAACCGCATATACATTAGCTTTGAAACTTCCGCC # Right flank : CTTTGAGTACTGGCGTAGAGTTGTAACACAACGAGTTGAAATTTTATTGGCGTTGCATATTTGCGGGATGAATTCAGACTTCGGGAAAAAGCTAAAAGTCGATTCTTTGCGCCTTTGCGCCTTTGCGTGAGACAAAAATCATCCCATCAATCAGCAACGCCATTTTATTTACTCTCTGTCAGAGACCATTTATGCAGTGAATCTGAGGTAGGGTGTGTTACGGCTGTGAAAGGATTTGAGACTTAGAGAAAGATTAGATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAATTATTGCGTGACAAATCATATTGAAAATAAGCACCTAACACACCCTACAGCAAAATTTGACTTACTCTCTTCAGGATTAAAACCCTTTGCTTCCAAGCAAGCACGGATGATAAAAATGAAGTTGAACTCCATAAAAAAGCCCGCTTGTGCGGGCTTTTTATTGATTACCAAACTCTACAAATTGCCTATTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 1704-1525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000044.1 Tolypothrix sp. LEGE 11397 NODE_44_length_46635_cov_36.2961, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1703 35 100.0 36 ................................... AAATTATGAGGATTCATATGAGCGGGCTGACGCTAT 1632 35 100.0 38 ................................... CGCCTGTTTTGGGGGAAGCTGATTTGGATTAAGAAAAA 1559 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 3 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Left flank : TGCTGATAGATTGTCTCAGCATATCTAGAAAAAATGCTGCCAAGCGCACTTGTGTTAAATTTAGTTCACTAATGTAAACTCTTTCTAAATTATCTAATCGATTTTGAACTAGCTTAACTACAGCATCAATACTCTTGGCACTTTCAATATCTATCTGTAGTTGGTTGCGTTCTTCAGTAAAAAGTGTAGTAATTTTTTTCATAGCTTTTAAATATACTTTAAATATTACTAATATTAGAGTAATTCAATTAGCAATTAAATTGCTGTAGGATGCGTTGTAACGCATCCTACCCATCTGTCGCGTTCTTTTTTCAAAATGGTATAAGGGACTTCCAAATAAAAAAATATCCCAGTATTTATTGTGGGGTGGACATCTTGTCCGCCCAGTTTATGTGGCGGGCAAGATGCCCGCCCCACAAGATGGAATAATTTATTTCTTGGAAGTCCCTAATTGATTGAAAACAACTCATACTAAGGTACATATCGTACTTGTTACTTCA # Right flank : CCTACCCTTGTAGAAAGCTTATTAAATAAGGCTTACAGCACCATAAAACTGAGGGGGGTCTGTTTTACCTGTCAACAAGCCACATTTATTGACAATATGGACAGCCTGCAAGTGCCTCAAACCCTTATAGAGTAAGTTATCTGAGGGGGTCTACGAAAGAATCAGCATTTGAGCTTTTGCACGACCCCCTCAGGTTACATTTCTTAATAAAATGGCTTAAGGAAACTAACCATGAGGTTACAAGCCAAAGATATATATTTATTGAATTTTCAAGGTGCAGCGATTGGTATAAATAGTAGCATAGCCAATTTTCAAAGGCAATCTCTGCCTCACAACAATTTAATCAGCAAAAGCAAGTATTGCTTTCTTCAAATCTGCTTTGGCTTTCTCAAAAGCTGTTTGTGCTTTCTCATTTCAGTGTATTCAGCAAGCCAAAGCAAATATTGCTTGCTCAAAAGCTGTTTTGGCTTTCTCATTTCAGTGTATTCAGCAAGCCAAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 13547-12630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000050.1 Tolypothrix sp. LEGE 11397 NODE_50_length_44732_cov_38.9541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13546 37 100.0 34 ..................................... AATTACTCTGCAACCGTCTCTTGCATCGGCAAAA 13475 37 100.0 34 ..................................... AACAGTTTTACAAACACAATGCAAGCCACTTAGG 13404 37 100.0 41 ..................................... GTTTGTAATTGAACGTTAAACTACCAGTGCCTGCGATTGAA 13326 37 100.0 38 ..................................... TGGTTGTGGGGCTGGGGCTTGCTGCCTGTCGCTGGCTA 13251 37 100.0 41 ..................................... TTACTGATAAACAAAGTAAATTAAGCTTTTGCTTGGCGGGA 13173 37 100.0 34 ..................................... AGTTTTCTCTAGAGTGGCAATCATTGTATTTATA 13102 37 100.0 36 ..................................... TTGCTAATTTATCCTTTGAGACAGTTGTGCCATTGA 13029 37 100.0 34 ..................................... GCAGAAGTTTGCAACACTCACCCAATTAATCAGT 12958 37 100.0 34 ..................................... AGCACCTATCTGCCTCCAAACGGTTTATGCTCAA 12887 37 100.0 41 ..................................... AAGACTTCGCTCTTGGTCGTAGCTCCACAGCGTACTCAATC 12809 37 100.0 35 ..................................... GAGCCAACAATCAGTTTTTCTCGCAAGACGAAAAG 12737 37 100.0 34 ..................................... GTGGGTGAAGCAAAACAGCGTATGGAAGGATACC 12666 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTTGAAATTTCTAATAATCCCTATGAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGACAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGAATGATACCCAGTACGCCAAACTGCGATCGCGCTTGCATAAGTTGATCAAAACTGATACAGACAATATCCGTTTTTACTCTTTATGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGTGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGAGGGGTAGGTGTGGAAAAACTAGTTCTCCCAAAAAGTAGGTGAAACTATTTCTCTGTAAGGCTTTCAAATTTTAATTGATGTCCAATTACCCGCGCGCCTTACAGAGATAGACTTTCAGCAATTTCGGTTTTGCGTTTTCACTATTGCCCGTGTTATTATGGCGCTATCCGCGCAACAGAACCTTGAAAACTGCATATAACTTGACTTTTGGGCTTCTGCC # Right flank : GACGAACGGGCTAAATCTCCGTTTGCGGGGATTGACGCATATCGATAGCGCCTAACATACCCTACATTTGATGGGTTGAGGCTTGACAACTAGAGCAGTCAACTATCGATTGCTAAAGAGGCGTTGCATATTTGCGGGATGAATTCAGGCTTCTAGACAAAACTGAAGGTCGATTCTTTGCGCTTTTGCGCCTTTGCGTGAGACAAAAATCATCCCATCAATCAGCAACGCCGCTAAAGAAAATTATCGATAATCTATCACCAGTAATGCTATTGCTGGTATTCTGAAAGCGGCAAGGCCATTACCAGAAAATTGACAAAGCAAAAGAAAAACAATGGAAGTCGCTACAACCAGAGTTCCCCGTTGGTTCGTTCGCAGAGATATTGATGGTTTATTTGGGCTGGCGCTGGATAATTTTATTCAAATTTTATTGATTGTTAGTTTGTGCCAAACAGTTCTGGGCTTTCCGGCTGAGTTAGTTTATGGGCGGATTTTGCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 418-979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000056.1 Tolypothrix sp. LEGE 11397 NODE_56_length_43594_cov_42.1822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 418 37 97.3 35 ................T.................... CTCCACAAACTTCAGTCAGAAAATTGTGTAATTTG 490 37 100.0 37 ..................................... AAAGTCAAAGACGTTTTTATTTTGAGCTACAGCATCG 564 37 100.0 37 ..................................... GCTTTACTGGCAGCGATACCACCATTACTTATGTAGG 638 37 100.0 37 ..................................... GCAATTTCAAAAAGGCTTTGATAGGCATCTACCCAGC 712 37 100.0 37 ..................................... CTGCGAAACCATCTGGTAAACCTCAACATAGGGTTGG 786 37 100.0 46 ..................................... TTGTCAACTGCTGTCTGCACGTCCGCGGGGACGGTTCCAGCAGCAA 869 37 91.9 37 A....T..........T.................... CTTGATTGTCGTGTCCAGAGCAGTAGAAAAAAGGTTA 943 37 89.2 0 ..................A.T..........AA.... | ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 97.3 38 GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Left flank : CCTTGTCTCTTCATCTCCCTCATCTCCCCATCTCCCTCATCTCCCCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCCCCCTCATCCCCCTCATCTCCCTCATCTCCCTCATCCCCAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTAGTTTTATCATGATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGGGGGCGAAAACCCTGGGGGATATGCCAAAATCGCCGGAACCTTGACAAGTGAATAATTACAGCGTTTTAGCAATCAGGAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCTG # Right flank : CACTTGAGTAGCACCGTTTTCGCTTACAAGGCTGACTTTGCGATCGCATTTCCCCGTAAGATGATGAAAATATAGCTAAAAATTCTAGGCGATTATAAAAAAAGGGGCACAGCACTGCTGTACCCTTAAGAATCATTTATCTACCGCAAATATCATTTAAAGTTCACGTAGGATGCGTTAGCGATAGCGTGACGCATCAGTGCCAAAGCTGAGATTTTTTCAGAAATCAAATCGGATTTTTATACATTTTGTTAGGGTAGTGAATTTGTAATTAATTTACCGATGAGGAGTCATTACAAGAACTGTTGCTACTTTCTAACGTTGACAAATCATTATCTACAACTCCATCCCATGAATAGTTACAGATTTTAGTGCGAAGTAATGTACCAAGTGTCACGTTAATTGCGATGGCAAAGGAATCAATAAAAACGAGATTCACAAAGCGATTAATCATTTAACCCTCTTGAGGTAACGGGAGCATCCAGTGATACTTGCCCTAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 1242-3310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000062.1 Tolypothrix sp. LEGE 11397 NODE_62_length_41409_cov_36.3925, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1242 37 100.0 35 ..................................... GACTCTGATTCAAAATTTTCTAAGTAGTAAGTAAT 1314 37 100.0 38 ..................................... CATCTTTTAATAGCTTCGTGTGGATGCAGTGGACGTGG 1389 37 100.0 35 ..................................... AAGCTCACCCTCTTGAATCCAATCCTTAACTTCAG 1461 37 100.0 35 ..................................... GTACGGGGGACTGGGGAAAAACTCGTTACCTTCAC 1533 37 100.0 36 ..................................... TTTTTGGCGTAGTTGCTGTATATTACGCGCTTACCC 1606 37 100.0 36 ..................................... CCAATGGATTCTGGTACTCTTACTGGCACTTTGGTT 1679 37 100.0 34 ..................................... ATCGGGTAGGCTCCACTCGTTTCTACCCAACCGA 1750 37 100.0 40 ..................................... CGTACCATCGTCGCTGGTATAACTGAACCATTTATTAGAG 1827 37 100.0 34 ..................................... AAACAATCGGGGAGCTGGTCTATAGATGTCGCTG 1898 37 100.0 41 ..................................... AGATATTTAGGAGATATCCACAGAACGACACGCGGAAGGCT 1976 37 100.0 34 ..................................... CTGATATTTGGTTGTTTCGATTCTCCATATTACT 2047 37 100.0 32 ..................................... CAGTGATTTTGTAGATATTATCGGGGGTGGTA 2116 37 100.0 33 ..................................... CTAGCCAAAATCAGCAAATCCAAGGAGAAATAT 2186 37 100.0 35 ..................................... TATCAAAATTATTTCCTGCTTCCCCCCAGTAAAAT 2258 37 100.0 34 ..................................... TAATTCACAAGCAGTCGATGAATTAATTGCGATT 2329 37 100.0 38 ..................................... GCTGGAGAATGGAGCAGCTACTTAGCTAATGCTGGCAC 2404 37 100.0 38 ..................................... GCCTGTGATGGGAAATTCACTAAGTCTGGTGCGGGTGG 2479 37 100.0 36 ..................................... TGACTATCTACATTTATCCAAATGTGAACCTGGCGA 2552 37 100.0 36 ..................................... CTCTAGGTAATGGTACTCAGCCTCCTGTATCAGACG 2625 37 100.0 33 ..................................... GTATTGGTACTCATACCCTTCAATCCAGTAGGG 2695 37 100.0 37 ..................................... AATAACTCAAGAGGAGATATCGCGGTGCTTGACGATT 2769 37 100.0 34 ..................................... TTCGGTAATTTTTGCTAGGCGCAGGGAACACTCA 2840 37 100.0 37 ..................................... CCACCTATTGGTAGGGCGGCTTTTTCATGGGTGCTTT 2914 37 100.0 34 ..................................... AAATTTTTCCCATCCGGCTGCTATTAAATCTTCT 2985 37 100.0 34 ..................................... AGTTCAGACTGATATTCACCAAGGTAGTACTGGG 3056 37 100.0 36 ..................................... GATGACATCCCCTGTGAGCTTGACTTAAGTAACTGA 3129 37 100.0 36 ..................................... GTATCTGACACATCCTTCGATAGACCCCTCCAATAA 3202 37 100.0 35 ..................................... ATGAGATTGCCCGAATCCCTTTGCACACATAGCAA 3274 37 83.8 0 G...A.......................A...A.G.G | ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 99.4 36 ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : CTTGGGGAAAAGGTGAAAGGGGAAGGGTTAAAGGTTTTTTCTTGCCCCTTTTCCCCTTCCCCTTTTGCCCTTAACCGACAAGTATTGGTAGTACTCTTGCTGGATTTCTTACAAGCAGCGATATAGCATATCTATGTTGGGTTAAGCGCTGACTTAACCTAACATGGATATTGAAAGCTTTACCTATATTGTTTGTAATGTGGTTGCTGCTTTGATTAGTTTGAATGTATTGGCGAAGAACGAGTCCGGAATGATACGATTTTCTTCGCCGGATGCGCGGATGGGTAGGTGTTGAAAAAGTGTTTTCCACAAAAATCGCTGAAACGATTTCTGTATCAGGCTTTTCAAGCTCAATTCCTGTAAAATCACCCGCGCACTTTACAGAAGAAGACTTTCAGCGATTTTGGTTTTGCGTTTTCATTATTGCTCATGTTATTATGGCACTGTCCGCGCAACAGAACCTTGAAAACTTCATACACACTGGCTTTGGAGCTTCTGCC # Right flank : GTGTATCGAGCAAAGTAAAAATCAAATAATTGTAGGGTCTATTAGGTGCTGATTTGCAAGATGATTTGTCACGGAATAACTATCCTAGCGCCTAACGCACCATTCACGCGGCGGTGCGTTACGGGTAAATTTCATTATCTCTGTGTCCCAAATCCTTTCATAGCCGTAACACAACGCCACTTGCTATAACGCGGGAAACCCGCGCAACGCAGTGCATTGGTGTCAACTTAAGCTAAAAGCGATATAGGGCGGGCGTTGTACAAATACCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCCTCACCCTGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAAGTTGACACAGGTGACCCCTACTCGGCTGACTCCATAGCAGATGTTTTTGACAAAATACTTGCGTTGTTAAACAAAGTGCTTGTCTTGTGTATACGCCACTATAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 26099-25325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000005.1 Tolypothrix sp. LEGE 11397 NODE_5_length_122547_cov_39.0606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 26098 37 100.0 36 ..................................... ATTTCATTTCTGCCATGTCCAACACTCACCCACACG 26025 37 100.0 34 ..................................... ATTCCATAAGAGATTTTCTTTTGATTGGCTCTAG 25954 37 97.3 37 ......................T.............. ATTGCAAGATGATCGCCTATTACCATTTGATCGCCTG 25880 37 100.0 37 ..................................... TTTAACTTTGGCGATCGCTTGGTTACGCACATACCCA 25806 37 100.0 37 ..................................... TTTTGCTTAATCTCCAGCCTGTTACCCATCCACTTTA 25732 37 91.9 35 ...G.T..........A.................... GCCAGTGTGGTTGTCTCGCCTAAAATGTGAGATGC 25660 37 89.2 43 ...G.T..........T.....A.............. CTTCTTGACTTCTACACCTGCTGTATACATCTCGCAAGGCACT 25581 37 89.2 36 ...G..A.....G...A.................... TAACCATATTCCCCAGGCTCATTCTTGGGGTCGATA 25508 37 91.9 37 ................G.....A........G..... AGTACAATCATTTGTACAGCATTAGCTGCATTATCAC 25434 35 81.1 37 C.....A--.......G.....A........G..... TTAGCAGCATTTTTGGCAACCTGAGCAACGTATGCAG C [25422] 25361 37 78.4 0 .........C.T....A....AT.........A.T.G | ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 92.6 37 GTTTCCGCTAACACTTCCCCCGCAAGGGGATTGAAAC # Left flank : AGTAGTACTTCTTTTACTAGCCGATGAGCCAGCGCCAGGTGTGTTGGCTCATTTTTGTTGTGAGTATTTGTACCTTTTTCTTACTTTTAAGAAACAAAGTAAGAAAAAAGTAAGAAACGCGCATTTCTTACTTTGTAAAACCTATATAGGGTGCGGATTTCAAGAGCCAATGCTACGCAACATTCTTGCGCGGTCGTACCTCTGTAGTAAAGATTTTCAGTACAACTCTATTAACTTATTTATCCTACGCTTGACAGGTTTTAGTAGCCTATTCTACTCTGTTGTCTAACTTGTAAAAAGTTGGCATATCGAAGCGAGGTCAAAAACCTGGCGTATACGCCAAAATCGTCAGAACCTAGACAAATCAATAGTTACAGCTTTTTAGCTATTAGGGATATTAGGAATTAGTTTCAATAACGGAGCCTGAAAAAGACCTAAATTTTCGACCCGTCAAATTCCTCCCTGAAACACTTGCTCTGTCATGGTTTCAATATGGCAGG # Right flank : GCGATCGCCGCCAAGGGCATCGCACCGTAAACGGAAAACCCGATTGAGTTAAAGCCAGGGCGCTAGTATTGACCCTGGCAGTTTTCGATTATGGACAAGCGAGATCAGTCGCCGTAACGTTACAGTGACTCAAATCTCGCCTGCCACAAACGAAAAACTTTAATGCAACTGGGGGATGGGCATTGGGTGTTGGGTGATGAGCTTGGTAATAAAATTAACTCTTTCCCATGCTTCGATACTGATTATGGGAATCCCCATAATGCTCTGCGATGGAGCAAGCGCCCCAGTTGCTCACACTTCCATCACGGTTAGCTCGCCCTGGCAAATCCTCGTGCCTGCCCTTTGTGGCGCTGCACAAGGGGTGCGGCGTACTTGTAGCCCTTATCTATCAGGCGCGCATCCCTCGCCCGCTTAAAGGCGAATGTCGCCGCCTTTGCCATCAAATCTACCGCTATGGCGATCGCAACCAGGGCGCAAACACCAATGATTGCTGGGCTGGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCTAACACTTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 18993-20631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000082.1 Tolypothrix sp. LEGE 11397 NODE_82_length_35617_cov_31.7476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 18993 37 100.0 38 ..................................... AAAGAAATAGAGTTTTAAGAAATAGCCCTCACGTGAGG 19068 37 100.0 35 ..................................... AACCAAATTACACGCCTACGGGCGTTTTTTTATGA 19140 37 100.0 35 ..................................... AGTGGAAATAGGAATAACACCTAAAAGAGCAAATG 19212 37 100.0 37 ..................................... CAATCACTTGAATGACCTTTGTATTTCTTTCCTCAAT 19286 37 100.0 35 ..................................... AGGGAATTATCAAAGGAATTATTTGGAGAAGTCCC 19358 37 100.0 40 ..................................... AGGGATGGTGTTCTAACTGACTGCTGCTTCTGCGCCATTG 19435 37 100.0 33 ..................................... GAGCTTGTCTTAAATAGTCATTGGAAGAGTTTT 19505 37 100.0 35 ..................................... TTTCAACTTCTTCAATATTGCTAGATACTCTAGAA 19577 37 100.0 34 ..................................... ATATACTACTGATGCGCCTGTTTGCCTACCCTTT 19648 37 100.0 34 ..................................... TAATTTTAGGCAAAATAAAAACCCCTCTAGTTGA 19719 37 100.0 37 ..................................... AATGGAATAAATAAATGGTATTTTGAATAGAGGTAGA 19793 37 100.0 34 ..................................... TCTACAAGGCAACCCATTCGGGCCAGGCTTGATG 19864 37 100.0 34 ..................................... TTTATTGAGAATGTTGACCCTCCATACGGAACAA 19935 37 100.0 35 ..................................... TTACTCAAAAGTATGCGGCTGAAATTAATCAGAAA 20007 37 100.0 35 ..................................... AACTGTTGCACCCATCTCTTCAGGCGTATAGACTG 20079 37 100.0 35 ..................................... CACTTAAATTCGTGGCATTACCTAGCATCAAATCA 20151 37 100.0 35 ..................................... TCAACAAAACACGCTTTTAAACTCTCTTAACTCAA 20223 37 100.0 36 ..................................... CAGGATACCGCAGAATTGATGAATTAATGGATGCGG 20296 37 100.0 41 ..................................... CTCTTAGTAGTTTCTCAGCAAAACGGTTGATCGCCTCACAG 20374 37 100.0 39 ..................................... CAAAGAATTAAAGCATCGCAATCTTGGACTATATATAGC 20450 37 100.0 35 ..................................... AAGAGTAGGTAGCAATCAAGGTTTGATTGCATCAA 20522 37 100.0 36 ..................................... TCCAGAACCCCCACTAAGCCCATACAAAACTTTGCA 20595 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.9 36 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACCAGATCGGGTTCTCTATCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACCAGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGATCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGGCTGTGCTGCTATGATTGAATATCAGCCGCCCGTAACGATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAAAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCATTGTTTTATTGCTTCTCAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCCATTTTGGGTTTGCTGCTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACAGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTGCCGCA # Right flank : CTGATATTTAATTTCTCTGCACATTCCCTAGCCTGATTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACCATACGTGTCAACTTAACGCGAAACCTGCTTGGTTGCAAGGTTTTTGCCCTCACCCCCAACCCCTCTCCCACCGGGAGAGGGGAGCAAGAGATTTAATTCCCCTTCTCCTGGGGGAGAAGGGGTTAGGGGATGAGGGCGAAAGTTTTGTACAACGCCCGTCCTATATAGCTTTTAGCTTAAGTTGACACGTATGGGCATCCACAATCTTTTGGTATATCAAATTATCTGACTGGTGCCCCTAAAATCTGTCGCATTCTTTTTTCAAAATGGTAAGCTATTCTGCTTTTAAGTTGCACAATCCCTCATGAGGTCTGTTGACGGTTGACCGTTGACAGTCAACCGTTAACAGTTAACAGCCTTCATGAGTAGTTATGCCATTTAGGCGCGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 31895-32432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000085.1 Tolypothrix sp. LEGE 11397 NODE_85_length_34402_cov_39.7691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 31895 37 100.0 34 ..................................... ATTATAAAATGAAACTTTACTGAAATTTCTAGCG 31966 37 100.0 33 ..................................... GCAATGCAGATGTGCAATGAAATAATGAATGCT 32036 37 100.0 37 ..................................... TAATTGCTGCTCAATTGGCTTTTTGCTATTTATCCAG 32110 37 100.0 35 ..................................... CGTACTCATCACCAGGGAATGGGGCGGTATCGCCT 32182 37 100.0 34 ..................................... AACATATCGCCCCCCATCAGCGGCCAATCTGCTA 32253 37 100.0 34 ..................................... AGAACAATTTTATAAAATCTATGACCTCAAAGAA 32324 37 100.0 35 ..................................... ATTAATTCATGTCCATATCCCGACGACTCATAAAA 32396 37 73.0 0 ..........................CTC.CCATTCG | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 96.6 35 GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCGTTCACAACCAACCTGATCGGGTTGTCTATCAATGAGCGCTCCTTCGTTCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTGGTAACCAACCTCGTCAATTTCTCCACTAACCAGCTCTCAATATATTGATGTTTGAGCCTTCCTAATGCATTAGCTGTGGTGCTAAGGTTGGATATATGGGCAGAAAATCAGCCCGCGACGATACTATTTTCTTGGCAGAATGCGCGGATGGGTAGGTGTCAAAAAGGCAATCTCACCAAAAACAGCTAAAACTATTTATACGTAAGGCTTCCACTGATTCATGGCTGTTCAATCACCCGCGCGCTTTACAGAGATTGACTTTCAGCCATTTTGCGTTTGCTGTTTCATTATTGCTTATGTTATTATGGCACTGTCCGCGAAACAGAACCTTGAAAACTATATATACATCGGCTTTGGGAGTTCCGCC # Right flank : GCGTAATCCAAATCGGAAATAATTAATTCCCAAAAAACCATGAAATTCCTACTATATATAGCTTTGGTTTTGGTAATCAGAATAGAAAGCTTACACTTACCCGATTTCCCTCAAAGATTTCAGTAGGAATCTGAATGTATCGGTGCGATCGCACCGTCATCGCACTGTGAACTAACCACGCCTCTAAAGGGTATATGGATAAAAGTTTGATGCGATTAATCCTTTTGTTGTAAGCCTTTTAACCATTTTGATGAATTCTTTATTTTCAGAATCGATTACGCGAACGATGAGCTATTAGGGATTGAAACGAACAAATGGAATTATCGCCAGTCAAACTGTATCGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACCATCAGCCAAATAACTAAACTCGCTAGCATCCATGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACAACCAGTCCGTCTACCAGGGAGGAATACTATAAAGAAGTTGAAATTTCTC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 32774-33478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXL010000085.1 Tolypothrix sp. LEGE 11397 NODE_85_length_34402_cov_39.7691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 32774 37 100.0 34 ..................................... CATCAGCCAAATAACTAAACTCGCTAGCATCCAT 32845 37 100.0 37 ..................................... AACCAGTCCGTCTACCAGGGAGGAATACTATAAAGAA 32919 37 100.0 39 ..................................... TTATTGATAGCAGAAGGAGACCCCAATCTTCCATTTGTG 32995 37 100.0 38 ..................................... AATAGTAATGCCGATAGGCAGGGGTTGACATTCTACAA 33070 37 100.0 34 ..................................... ATTACACCATCGGGAATGCTCCAGGTTCTCAGCA 33141 37 100.0 40 ..................................... AAGCAATCGGGTAATGTACGGAGCGCCAACGGGAAGCGGC 33218 37 100.0 34 ..................................... TTCAATACTCTAACTCTATCCCCCCAACAATTAT 33289 37 100.0 34 ..................................... AAGACTACGACGGATAAGCAGCAAGGTTAATACT 33360 37 100.0 45 ..................................... AAGTATTAGCCGCATTAGCGGAAGTAGTAACGATAGTGGCAAGAG 33442 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 10 37 100.0 37 GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Left flank : TATTAGGGATTGAAACAGAACAATTTTATAAAATCTATGACCTCAAAGAAGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACATTAATTCATGTCCATATCCCGACGACTCATAAAAGTTGAAATTTCTCTTAATCCCTATTACTCACCATTCGCGTAATCCAAATCGGAAATAATTAATTCCCAAAAAACCATGAAATTCCTACTATATATAGCTTTGGTTTTGGTAATCAGAATAGAAAGCTTACACTTACCCGATTTCCCTCAAAGATTTCAGTAGGAATCTGAATGTATCGGTGCGATCGCACCGTCATCGCACTGTGAACTAACCACGCCTCTAAAGGGTATATGGATAAAAGTTTGATGCGATTAATCCTTTTGTTGTAAGCCTTTTAACCATTTTGATGAATTCTTTATTTTCAGAATCGATTACGCGAACGATGAGCTATTAGGGATTGAAACGAACAAATGGAATTATCGCCAGTCAAACTGTATC # Right flank : CTGCCAAAATCGGAACGGGCATCAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATCTCTTACCCTTTCACCTTTTCCCCTAACTAAATTCCCAGTTGAAAATCCTTAACCGAGCAGTATTGCCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCATCTCCCCGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAATTTGACACCACTGGGGCAATGCCTTGCCCCTACAATCTGTCGCCTTCTTTTGTCAAATTGGTATAAGATTTCTCTTCTCTATGCTTTGGCTTTGAGGGTAGATGATTTTATCAACTCATCTACTCACCCACTTTAAACCTTTGACTCAACTACTTGTTGCACTCCATTTAATTGCTGAGGCAAACTCCAGTCAGGACGCAAGTTAGCCGCATGACGTAAATATATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //