Array 1 80875-82005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 80875 37 100.0 36 ..................................... CATTTTCCCCAGACATCCACCATTTAAACTTTTACA 80948 37 100.0 38 ..................................... AGATATTTCTCTAGCTGCCCAGCAGATGGGCCACTCAC 81023 37 100.0 40 ..................................... ACTTGCTTATCGCTCCCACCAGAACTAATCCTAGTTTTGC 81100 37 100.0 38 ..................................... TAGCTGCTCATGGGAGTAACCCAATAAGGGGTCATTCG 81175 37 100.0 36 ..................................... GTCATTTGCACAAACTAAAATTTGGTTAAAACTATG 81248 37 100.0 35 ..................................... GTGTAAACTTCCTCAATTTTGCTCAAGATATTGAG 81320 37 100.0 39 ..................................... ATGAATAAAATTTTGCTTGACCGCGGACTCCAGATTAAA 81396 37 100.0 35 ..................................... GCGGCACAACTTAAAATACCTCCCTCAATTTTAAA 81468 37 100.0 33 ..................................... TACCCGTTTCATCCCCACTGGGTAGAGAAGTTT 81538 37 100.0 34 ..................................... TTCGCTGGAGATGACCAAAGAGCAAATAGCTCAA 81609 37 100.0 35 ..................................... TGAAGTAACTTGTGGTCATGCTCAAAGTTTGCAAG 81681 37 100.0 33 ..................................... TGGATCGGGTGTACAGCAAGAAATACAATCGGC 81751 37 100.0 34 ..................................... CAGAAATTACGCGATCGCATTTGGGCATCTGCCA 81822 37 100.0 40 ..................................... TTTAGTTGCTAACTCTGCAAAAACTTCCGAAGCGCCTTGG 81899 37 100.0 33 ..................................... CTAATCCGCCGCGCTGGCGCTAATCCGTCAAAC 81969 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 100.0 36 GTTAAAATAATCCATAATCCCTATTAGGGATTGAAAC # Left flank : AAATCACAACTATATGTTTGCAATGCTATCAAAGCTTCAGCACCATTCTCAGCCGAGCTAATTGTGTAACCTTCCGCCTCTAAAATAGTTTTGACGAGAAAAATATTATCCGGGGAGTCGTCCACAACCAGAATTTTGTCAGAACGGGAAGATTGAGGATTCATCGTGTCAGTGGGTAGAAATAAAACGCACCTTTTTCAGTGTAGCCGTAGTTATATAAGTCTGGGTCATCCCCGCTTTATCTATCAAAAATTTAGCTCTTAGCTGCATCTGTGCGCGGATGGTTAGGTGTAAAAAAAGAGGTAAAGGTAAAATACCTGAAAACCCATATACATCAGGTCTTGAAGAGGTTGATTGATAAAAATGATCCGCGCACCTTACAGGGATTCTATTTCAGCTAATTTTCTACTTGTGCTATCTTCGGTTTGAATGTTATATTTATCTCATTCGCGCAACTGCACCTTGAAAACTAAATAAGTCCCAGGTTCTAGCCTCCCGCA # Right flank : CTGTAAAACTCACAAATAATAAAGTTGAGCTTATTCAACTCAACTTTATTATTTGAAAAATACTGATAATTTACTGACTTGAATTCTCATACAATTTGAGAACATGTGATTGATTGAATGTAAATTTAAGACTTCAATCAGTTAATTTATAAGTATAAGTAGGATTATCAACTTTAATTTCTAAAAAATTTCTTTTATCTGTGTTATCACCAGAACATTTATCACCAGAAAAGACGAGACTAAAATCTTCTTGGGTATTGACACAGAATTTATGGTCTTGATTGCTTCCTTTCCAAACAAAGTTTTCGTCTTCGTCAGCAGCATAAATATAATAGAAATCTTCAATATCTAATGCTTGCTTGACTACAGTTTCACACTCTCCTTTAGGAACACGCCACCAGCCTTCTGACTTCCATTTATCATCACCAAGTCCGTAACCGACAGCAACGTAAGCTGTACTAGTTGATTCATTGCAAACTTTGAGTTGGGCTTGGGCTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAATCCATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 899808-898974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 899807 37 100.0 35 ..................................... CTTCCATTCGCTCAATGTTGACTGGGCAACTCCAG 899735 37 100.0 39 ..................................... ACGGTAGAGGCACAGGCGCAAAAGGCATCTGTTTCAGCC 899659 37 100.0 34 ..................................... GAACGGAAGTTCCTTCCAGGAAAAATACATAATG 899588 37 100.0 36 ..................................... ACACCAAGATTTCAATCACAACTTGATAACGGCTAT 899515 37 100.0 35 ..................................... TGCTTGCTTCATCCCTTGTGTAATTAACGTCTAAC 899443 37 100.0 34 ..................................... TCCTAACACCTCCAGAAAGCCATCAAGTTTTCTT 899372 37 100.0 32 ..................................... ATGATAATAATCTCCATTTTGGTGGAACTGAA 899303 37 100.0 38 ..................................... CCTGGTATTCTGGTAAGTACAAGCGATAGTTATTCCTT 899228 37 100.0 32 ..................................... TTGCCTATGTAAAATAAGTCTTATCGTTATGA 899159 37 100.0 37 ..................................... GATAATCACAATTCTGCCTGAATCATCGACCTCTATA 899085 37 100.0 38 ..................................... TCGCGTGGCGAAATAAACCTTACCTTTACCAATAAAAT 899010 37 97.3 0 ...........................A......... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 36 GTTTTAAAACTCTATAATCCCTATTAGGGATTGAAAC # Left flank : GAACTGCCAATAAACTAACTACACATACCCCTAGTAATTTAACGAGTGAATATTGCTTTTCATTAGTTGAATTATTGAAATCATTCATATGCTATGACCCTGGTTATATGGTATAATTACTATTACTTGATATTCATGACTAAAAATCTACTTAATTAGATTCTCTGAATCAACCACTTTGTTAACTGTCATAAATATTGCGATCGCTTCAGGTACATAGACAGCAAATTTAGTGTTTTGGGTCAAGTCTTGCGCGGATGGGTAGGTGTAAAAATTTTTGTCGTTGCCAAATAGCTTCTATTGCCTATGTTGTCAGGACTTCCGGTAATACTGAGCCAATTCACATCCGTGCAAACCTGGAAAGACTTACTAGATAAAGGTTTGCGGTGTTTTGTTCAGTTGAGTCTCTTGTCAATCAACAGCGCAAATGCTACTATTGTTATTGAATCGCGCAACTGCACCTTGAAAACTAAATATAATAAGGGTTTCCAGCTTCCGCA # Right flank : CTAATCAAAAACAACCATTTGCGGTGCGTTAAGCGTTGCTGTAACGCACCCTACTGGACTGTATAAACCAAATCTGTGCATTAAGAAAGACCGAAAATTTTGATTATCTAATAGACCCTTTGCAAAAGTAATTCTTTGTGTTCTCTTCTGGAGCGCCTTTGCGTCTCTGCGTGAAACAAAAAAATATTTAATGCAAAAAGTCTAATAAATATTTCAACAATCTAATGCACAAATTTAGCCATGTAAATCCACGACAAAAAGTATCTCTTCGCGCTGCCACCTATCACCTGCTATAAATTCCGGGGTGGAATTTCCTCACCTTGATAAAACCGTTCTTCCAACTTACCCAAAGCAAACCAAATCCCTGCACCACTAATGACAGCTAAACTTAAAATACTGCCGATAATCACATCTAGTGAATGATAGAAAAACATCAATAAAGGTAACAGCGACCAAATTAAAATTGTTCCCCCAGCTATTCCCAAACGAATCTTTTTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAAACTCTATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 3772980-3773527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3772980 37 100.0 35 ..................................... CTGTACCACTTTTGAGTGGAGAAGTTTTCTGCCAA 3773052 37 100.0 35 ..................................... CCAAAGATGTTGGACAGCGCCTGAATTTGCTTGGA 3773124 37 100.0 35 ..................................... CAAAATCTTAGATTGAGTTTCCTCGTCTTGGATGA 3773196 37 100.0 37 ..................................... AAAGTTAAGTCAGTTTTTGCAGCCATCGGCTTAATTT 3773270 37 100.0 36 ..................................... AGAAAAGATAAGGAGTGATCAACAGTACACACATTT 3773343 37 100.0 34 ..................................... ATTTGATTAGTTTGGTTATTGATGTTGTTACCAA 3773414 37 100.0 40 ..................................... TTTGCCTGTTTTTGACGCAAGTGACACCATCTATGGCTGG 3773491 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.7 36 GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Left flank : ATTAGCCATAAACGCCTATCAATCCCGAAAAGCCTAATTGACAAAACACCGAACCTTGAAAATAAAATAGTAATCAACAATAGCGCCGCAGTTCATGTTTTTGATAAACCTCTGAACTGAGATAAATGTGGGTTAGTTTGACTGTTGTGAGACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTTCCTAGTGAACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTATTTATTTTTGGCAAACCATAAGCGAGGTCAATTTCCCTGGGTTTCTGCCAAAAGTCCAAATCCTTTGTCTAGTCTGTGTTTCAGATATTTATGGTTTGAGTAATACTCCCTGAAAAGGGAAATTCAAAGCAGATTTAGACACCTTTGCCAAAATCACCTTTGGAAGTGTCTCTAGATAAGGGTTTGGTCGGGCGGA # Right flank : CAAGCTTGATAATTGCTTTATAAACACTCCGCTTTATAAAAAAGCTGTTAGAAAAAGGTGGGTTGAAAGCGAATCCAGTTACGTCCTTTACATTAGATAATTTGCCCAAATACTGAAAAAATTTGTACGCATCAGCACCTAACAGCGAGAAGCAGAACGCCACGCAAAAAATTTATTTCCAACCCTGCTCAATTGAATTTTTCGTGGTGAAATTACATCCTCTATAATTGAGAATGTAGACAGGAAGATGTGAGTGCTGGATTTAGCAGATTGATTAACCGAACCAAAAGGACGATTAATTTGTCAACGCGGTCAAATAATTTGGCAATACGGACAACAATTTGTCAACGCGGTCAAATAATTTGGCAATACGGACAACAATTTGTCAACGCGGTCAAATAATTTGGCAATCGACAGCACAGAGCATGTACAATTACCAATGAATATATTCATAAAGTGGACGTAACTGGATTCGAACCAGTGACCCCATCGATGTCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 3956776-3959926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3956776 37 100.0 36 ..................................... TACAATAGGACTAAGTATGGCTAGATTGCATGGAAC 3956849 37 100.0 35 ..................................... TCCTGTTCTCCCCAAGTTGGGCTAGTGCCTTTGGG 3956921 37 100.0 33 ..................................... TATATATACTACCGATAGTGGTGAGGACTTCGC 3956991 37 100.0 33 ..................................... GGCGCGATAAGCAAGTAACCCGGCCCCCACAAT 3957061 37 100.0 38 ..................................... ACAGTCAATTAAGGTTACTTCGATAGGGCAATCACCGC 3957136 37 100.0 36 ..................................... TAGAACTTTTTCGGGCTTTGTCAAAAGTCTGAATAA 3957209 37 100.0 34 ..................................... CTGACCATCCTGGATGGTAAAACTGGTTATCGGG 3957280 37 100.0 35 ..................................... TGATGCTAAGGTTTTGGCTGCATTAGCAGTTGCAT 3957352 37 100.0 37 ..................................... ACCGAGGTCATTTGATAGCATCCAAGCATTATGGATG 3957426 37 100.0 40 ..................................... TCCTCCCAAAAAGTGACTCATTGCGGTCGTGTCGTGTCTG 3957503 37 100.0 33 ..................................... AAAGGTCTGTCAGGAAATCGAGCTTGTCGTTAG 3957573 37 100.0 34 ..................................... ATAGACAGCTATTCTCACTCTATAGATGATTCCC 3957644 37 100.0 35 ..................................... TTCTAATCACTTCAACAAACAGGACAAAGGCTCTA 3957716 37 100.0 34 ..................................... GAAGGCTTGCCTAAAATCTCCCCGTCAAACAATA 3957787 37 100.0 34 ..................................... ATCGTCCATGCGGATTTCCATCTCTGTGCCGATG 3957858 37 100.0 34 ..................................... TTGTCCACACCGAATCACCAGGGGACGTAACCTG 3957929 37 100.0 34 ..................................... TAGATGAACTAACCGCGAGAGCGGAACATATCAA 3958000 37 100.0 36 ..................................... TTCTCTATGCAGAAAGTTGATTGGCGGTTTTGCTCA 3958073 37 100.0 32 ..................................... ATCAACGGCATACCTATCAAATACCCGATAAT 3958142 37 100.0 36 ..................................... ATTAAGAGGGACGTTACCACCAAAGCCCCACATCAA 3958215 37 100.0 34 ..................................... ACTAAATTCTGTTGGGGAGTGTAGTGATATATCT 3958286 37 100.0 36 ..................................... TTTGTCGCTGCCATCGCCCAAGTCATCGGAGAAGAA 3958359 37 100.0 35 ..................................... TCATCAATTGTTAGCAACCAAGGCATCTCTACCCA 3958431 37 100.0 35 ..................................... AAGTCTTTGGCAGATGCTCCAAATTTCCTCATACG 3958503 37 100.0 39 ..................................... TTGCTTATGCGTGGAACAATCTGTATAGCGAATGGCAAG 3958579 37 100.0 38 ..................................... TCGCATCTGGCGGAGTTCGTCACAAGCTTGCAGCTCAA 3958654 37 100.0 36 ..................................... GAGCCTGAGAAGGTTCCTCCTTGAGGAGTTACATAG 3958727 37 100.0 37 ..................................... ACACCTTCGCTACTTGGGCGATCGCTTCAGGAGTTAG 3958801 37 100.0 38 ..................................... TGATTTATTACAAACTGAGTATGTATAGAATGATTTCT 3958876 37 100.0 36 ..................................... GTGCCTCATGTTGGTGAACTCAACGTGAAGGAAGTC 3958949 37 100.0 35 ..................................... TTGTAAAACCCTTGTGTGGTAAGGGTTACAGAAGA 3959021 37 100.0 35 ..................................... CCAAGTGGTAAAAATAATGCTTCCTCTCGTCCAGC 3959093 37 100.0 38 ..................................... TGGTTTGAGGTGAACTAACCCAGTCAAACCAAAGTGGT 3959168 37 100.0 36 ..................................... CAAGTCAAGCCAGATACCGCACCAATTAACAGAGAT 3959241 37 100.0 36 ..................................... AAACGTGCCGTCCGTGAACTCAAAAATTTAGCTAAA 3959314 37 100.0 36 ..................................... ATCCTCATCTAATTGAAGTTCTTCGATTTCATCCTT 3959387 37 100.0 34 ..................................... TTCATCAGCCCTTTTACCAGAAGCTCATCATATC 3959458 37 100.0 34 ..................................... TCTTTCTGGGCAATGGCCAGATGATAAATATCAC 3959529 37 100.0 35 ..................................... AGAAGCCGAAATAGCCGAAGCCAAAAAAGCTCTAG 3959601 37 100.0 35 ..................................... CTCACAGAGACCACCTGCGAGCAACCTGTATTCCC 3959673 37 100.0 35 ..................................... TCTTAAAGTTAGCACTCTTGGAATTTTTAAAGGAG 3959745 37 100.0 37 ..................................... GAGCGATTTCGCTTACAAGAACCTGGGAACAGGCTAG 3959819 37 100.0 34 ..................................... CTGGACAGAGACACAAATAAAACACGTATTTTTA 3959890 37 78.4 0 ...................T.........GCCAG.CA | ========== ====== ====== ====== ===================================== ======================================== ================== 44 37 99.5 35 GTTTTAAAACTATATAATCCCTATTAGGGATTGAAAC # Left flank : ACTCGGTTCTTAAATCTTACGGACAATGGATGCAGTTTAGTGTTTTCGAGTGTGATTTGACTCCAACTCAGTATGCTAAGATGCGATCGCGTTTAGCCAAACTCATCAAACCTGATACCGACAGCATCCGTTTTTATTTTCTCTGTCAATGTTGTCAAGGCAAAGTAGAACGCATTGGTGGTGAACCAGTCAGAGACAACACAATCTTTTTTGCTTAATCTTGATTTCATCATGGTTTCAGGTTCCAAAATGCGCGGATAGGTAGGTGTAAAAATGGAAGCCGTGAGAAAATTGCCTCTATCTCAATCACAGCAACGATTTCCAGCATTTATCCTCTAAATCACATCCGCGCAAAGCCTCAAACCCTTACAGGAAAAGACTTTTTTGATTTTTTATTTCCTTGTACTCTTGCCAACCAACTGGCAAAACCATATAATTTTAATCAGTTCGCACAACCGTACCTTGAAAACTAAATATAAAAATGGTTTCAGCCTACCGCA # Right flank : ATCTTACAAAAGTTCTTCTTTGTGTTCTCTTCTTTGCGCCTTTGCGCCTTTGCGTGAAACAAAAAAATATTATTGCAACACAAAATCAATATTTCCATTAACAACCCAATAGGCTATTTTCTTATCTGTTATACAGCTAAATTTTATCATCATAAAAACTTAAGCCTTGTGGACACAATATCCGCACCACAAGACTTAATATCAACTAAATACACAACGACTTAACGCACCAATAAATATCCGCTGGCACATTAAACCAATTACCTTTCAAAATCCCCAATCATTTTCCAGAATATAACATAATTAACTTACCCCAAATCAAACAACAATATTTCCGCTTTGATATTAGTGGTAATTTCTAAATCTTCCGCTCCATTAACTTGTACCCCATCACCTGCCCTTAATTCCTCACCATTCAAATTAGCCACACCTTGAGCAATTTGTAACCAAGCATAACGAGTAGATGGTACATGATATTTAATCACATCACCAGATTCTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAAACTATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 5150019-5149019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5150018 37 100.0 37 ..................................... ATGAGGTATTCTTCCTGGGGCTGGACGGGCTAAAACG 5149944 37 100.0 35 ..................................... GGGAGGACGTACCAGACAGAACTCAGCCCAGTTAC 5149872 37 100.0 40 ..................................... TCGACCGTCACGTCCTGGCAAGCCTCTGCTTCCATCTAAA 5149795 37 100.0 37 ..................................... AAAATGGATGGGATGGTTTAAATGGTGCTGACGGTAG 5149721 37 100.0 40 ..................................... TGTCCATCACGACCGGGTAAGCCACGCTGACCATCCCTAC 5149644 37 100.0 34 ..................................... TCCTTCCTCGATTTCAACCGACAAAATATCGAGT 5149573 37 100.0 43 ..................................... TTACTTCCTCTCCTATCTGGTTTTGGTTGGTAGATAAGCTCCA 5149493 37 100.0 32 ..................................... TACAGCATCAGAAATTATTCTATTTCTATCGC 5149424 37 100.0 35 ..................................... GCCTACCTTTTTCCGGTGAGCTTCATTGCTCCATT 5149352 37 100.0 40 ..................................... AGGAATTGGAAATCTATCATCTGGAGGTGATAGATGACTA 5149275 37 100.0 33 ..................................... ATTGGTGTAGTGAAGAGAAATGGAGCAAGTTGG 5149205 37 100.0 35 ..................................... TCTTCAACCATTTCTAAATCCTCCACAACTTGTGG 5149133 37 100.0 41 ..................................... ACATAACTGTAAAGAAGGTAAATCTTCAGCCTGTACGAGAG 5149055 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 100.0 37 GTTTTAAAACTCATAAATCCCTATCAGGGATTGAAAC # Left flank : CAAGGCTTTGGATGTAAACCCAGCTTTAGCAAAAGGTTTGAATGTGCAGAACCGTCGTCTTGTTCATCCCGCAGTGCAAGAGGTGTTTCCTGATTTGGTGAGTTAATTGCTGTGGTTTCACATAGCGAAAGCAAGTTGAGGTTACAGCAATTTTTGGGTAGATATCTACAGCTTTTTTGTTTTACGCACAGAGCAAGTGTAATGAGATACACCCATATTGCTGTAATTTCATCGTGGATAGTTTGCCTGGCAGCGCGGATGGGTAGGTGTAGAAAATCTGATCAACCAACAAACGCTGTAATGTCTAGTCTGGCAAGGGTTACAGCGATTACTCACTATTTTTGATTCGCGCAAGTTCTGAAATTGTTAATGGGTAAAGGGTTGGTGATATTTCTTATGGTCAGTATCTTTTCAAGCGATCGCTCTAATGCTATATTTATAATTAGTTCGCGCTACCGTACCTTGAAAACTAAATATAGTAAGGGTTTCTACCCGCCGCT # Right flank : TTATAACGATTGGGGAACGATAGGCTTAAATTTAAAATTTGTTAAATCTAGGGCTGTGCATTGCTGCCCATAACCAATATTTAATATGAAGTAATAGTCTGTTCATAATTTTTTCTTCGTAATTGGGAATTATAAATTACAGAGAATTTGGAGTAACTATTGTGAGTGAGCCTGTCGGACTGTCGCAATTTGATGTTGTGTCCATAAATAAAACTAAGAGTCCTTTAAACGCTGCAACTTTTAAGGTGATTGAGTTTGCTATTAGTTTGGCGGGGAGGTTATCCAAGGAACTTAGTGGGGAGACATGGAAGGAGTGGTATAAGGATGGCGTTGAGTGTGAGGTACTTCGCATGGACGGGACTGGCTGGCAGTCGGGGAGAGTGAGAATTTCTCTAGAATTTATCCCCGCCGATGAGGAGGAAGATGAGGAGGAAATGGAAGCTCAATTAGAAGATGTGACCTCTCCCCAGTTGCCAGAGTCTCCCCTGGATGACTTACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAAACTCATAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 6 5225654-5224650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5225653 36 100.0 38 .................................... ACTTTTTAGTTAGTGGTACATCTGGATAGGGGTCTTTT 5225579 36 100.0 36 .................................... GAGATATTACTAGCTGCTTTGGTTCAGTCTTTGTGA 5225507 36 100.0 37 .................................... GTTGGGCTCGCTGAGGGCTAGCTCTATCCCGTAGGTC 5225434 36 100.0 37 .................................... TTGTATGCAAGTTGAATATCGTAGTTCACCTTGTTAG 5225361 36 100.0 37 .................................... TGGAATACCGTAAGCAATTTAGCACTTGACTTAAGGT 5225288 36 97.2 40 ...................................A CTTTTTTCAAAAAATGGCTATTTTTTACAATACGCTCAAA 5225212 36 100.0 42 .................................... CCCCGGCATACCCTGTCATGAGATTTGGGTATTAGAGTCCAG 5225134 36 100.0 41 .................................... CAAATCTGCAAAGAACGGGGAATAGTTCCTACCGGTGATAA 5225057 36 100.0 35 .................................... TTCTGTAGCCGTTCGCGCTCTTTAGTTTGTTCCTT 5224986 36 100.0 40 .................................... ATGGTAAACCTAAATCATTACCTCTATCGTTAGCAACATA 5224910 36 100.0 42 .................................... TTACCCATTAAGTTAGTATTAACGTTTTTCTGAATACCAGAT 5224832 36 100.0 36 .................................... GATTTTCCTCCTGATTCTTTTGGCATGAGCTTTCAG 5224760 36 100.0 39 .................................... TGTATTAGCTGATTTTCTGGGCATAAGTCCCTTAAGAAA 5224685 36 86.1 0 ................A............AC..TG. | ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 98.8 39 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TTCATATTTCCCGGTGCAAGATATAAGTTAAGTTTATGTTTTTGTATGTAATTTCTTACGATATTCCTTGCGATAAACGTCGTAAAAAGGTGGCTGATTTATTAGAAGGATATGGGCAGCGTGTGCAGTATTCTGTATTTGAATGTCAGTTAAGCACAGAGAAGTATCAAAATTTACGCCGTCAGTTAAGGAAAAAGCTGAAGTTAGAAGAGGATAATGTGAGATTTTATCCGCTGTCTAGACATACTCTGTCTCAGGTGGAAACTTGGGGTGTGGGAATACCTGTGATTGAACCACCAAGTTCAATTATTATCTAGTTGTTTCCGAAGTAGGACTAAAATGGCTGGAGTCTTGATTTCTTGGTTGTGACCTTCGATAGCTTGCCGAATATAGGTTACAGGGTTTTAAATGGTTGCTTTATGGGCTGTTTGATGGTGGTTTTCCTGACCTTCGGAAACTGTCTCTAGATTCGTTACAGAGTAATGGTTTAAAATCTAGGT # Right flank : CTTTGGCACGCCTATGGAAACTAGCGATCTGATCGCCATTCTTACGTGGTAACTCCCACCATCAGTTAAATTAAATTTAGTGAATTTATACTATAAAAAGCTTGCCAAGCAAAACACAGCCATTTTAAACCTGCATAAACGATAACAGATGTCAAAAACAAGAAAATATTTGTAATAAAATCCTCAATGTGAAGAAAAGATTACAGAGTAAGAGTTATAGACAACCTTACAAAATTCTTTAGATATTTTTGATTCCTAGACAAACACTGAATTACGCCATTAAGATTTACCTATAAGCTACATAGGGATATTACTGATGACAGCGGAATATTGGCGGGCCAAAATCTGGGGGTTGCTGCATGACCCTGTATTAAAAGCATTACATAATAATAGTGGACGGGGGGGTAAAAGCTTTTTTGAGCAACTGAAAGTAATGCAGCCTTGGGTTGAGACGAAGAAAATCCCTGGTACATCTGATGGTAAAGCTCTAGAAAATATAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 7 5290803-5289465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 5290802 35 100.0 38 ................................... ATAAAACTTGTATTTTGTATTCAGAAATACTATCCATA 5290729 35 100.0 37 ................................... GAGTCCATATTCTTTACACTCCCAATCCATTATTCTT 5290657 35 100.0 34 ................................... ATTTACTTCATCGCCTAACGACCTCTCAATTGAA 5290588 35 100.0 37 ................................... TGGAAAGATATCTGAGATTGAATGTTACTCAAATCTA 5290516 35 100.0 37 ................................... TCTATTGGAGACTGATTTTGGTTGGAGGGATCAGATG 5290444 35 100.0 41 ................................... GTTGAGCAAAACTGATCTTTGTAAAACCAAAACTGAATCCC 5290368 35 100.0 36 ................................... GGCATAGGAGTCCAAGTAGGACCTGGTGTTGGGTTG 5290297 35 100.0 37 ................................... ACAATCGAAGTCCCCACAATCCGTTCCATCTGTTTGT 5290225 35 100.0 37 ................................... CACACTTGCCTGACTTGGAAGTGACTGGAGTACGTTG 5290153 35 100.0 38 ................................... ACCATTTGAAAATCCGGCATAAAATGCAGCACTCAAAG 5290080 35 100.0 43 ................................... TGTTTGGCCAAACGTTGTTCGCGCTCCTCAAAAGTAATTGTTA 5290002 35 100.0 36 ................................... TCTAGTTGCGTTTTCGAGTCACAACTAGAAGTAAGT 5289931 35 100.0 38 ................................... TTCTTGAAATAAGTTTTTGCTCTTCAGGAGAAGTGCTA 5289858 35 100.0 36 ................................... TTGTTGCAAGTCTAGTGGAAATGGTGTTTCTAAGAT 5289787 35 100.0 37 ................................... ACTGTGTTGTATATAATAAACCCTTCCACCTTTTTTT 5289715 35 100.0 35 ................................... ACATGGGCAATTTTTTTTGCCTTCAATAGTAAACG 5289645 35 100.0 37 ................................... TGAGAATAAAATTCCTTTTGAATGTTTTGAGAGATAA 5289573 35 100.0 39 ................................... CGTAGTCACCTTGGGAAGCCCAGACATTTCTAATTTCTT 5289499 35 97.1 0 ..................................A | ========== ====== ====== ====== =================================== =========================================== ================== 19 35 99.8 37 CTTTGGCTTCTATGAAGTCGAATTAAAATGGAAAC # Left flank : TGGAGGAATTTCGCGCCCAAATAGTTGATTCTTTTGTGAGTTATTTGGTGAATAAGAAGATTTTAACTCCAGAAGATTTTACTCTTCCTGATGAACGGGGTGGTGTATACTTACACCCAGATGCTTTGAAGAAGTTTCTGAAGCATTGGGAGGAAAAGTTACAAACTGAAGTTACCCATCCCCAGACGGGTTATAAGGTTGTCTATCGTCGCTGTATTGAGTTACAGGTGCGTGAGTACATTGCTTCTTTGATGGGTGAGGTGGAAGTTTACCGCCCTATGATTTGGAAAATGTAGCATTTTTATACCATTTGTGGGATAGACACAATGGCTGAAACCCTGATTCTTTCGTTCTATCCCACAAATCACTATCCTGATAAAGGTTTGAGGTGTGTTGAGATAGAACTTATTGATAGTATTTCTCAATTATTTAGGGTAAAATTTGCATCCCACAAAAAAATGTTGTAGGATTAGCTCAGGGCAAGGCTTTCAAGCGGTAGC # Right flank : TATCGTCATAAAAGAAAACCGGAGGTTAGTTCCTCCGGTTTTTTGTTTTTCGTGCTTGACAGTAAAATCATCCTAAATTATTGACTAACTCATAACTCAACTCATAATTCTTACTTCTCAACTCATAACTCAACTCATATACGCCCCTGAGAAGATGGAATTAAGGAGTTCAGAAAACAGCAATTCCAAATTTAATAGCAATATTAATCACTGGTTAATTGTCTTGCTGAAACTCCTTGTTTTCCACTCTTAACTATTAACCACATTATGCCTACCGTTTACATCACCGAACAAGGCACATTACTAAAAGTCCAGGGCAAAAGTTTAAACATTTGGCAATTGCAAGAACTACGGCTGACATTATCTCTTTCTCAAATTAGCCAAATTATCATTTTTAAACACACTCACATTGCCCCCAAAACTGTCAAACTGCTACTCTCGGAAGAAATTCCCACTTTATTTCTCACCCCCCAAGGAGAATATATCGGCCGATTAGAAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTCTATGAAGTCGAATTAAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 5305327-5306033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021056.1 Richelia sinica FACHB-800 strain FACHB 800 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 5305327 36 100.0 36 .................................... TGGTTATCATGCCGTGAACACAAACGTCATATTGAG 5305399 36 100.0 36 .................................... TTCTATGTCACTATATGTTTCTAAGTTCTTAATTAA 5305471 36 100.0 36 .................................... TTTTGACTTGCATTATTAACCCCTAATTATCAAAAA 5305543 36 100.0 55 .................................... TTAAGATCGAATAACTCCTGAAGTCCTAGTTTTGATGCCACGGCTGATAATTTAG 5305634 36 100.0 35 .................................... TTAAGATCGAATAACTCCTGAAGGCTTGATTTTAT 5305705 36 100.0 37 .................................... TTATCCTTCTGATACTGAATACTTGCCATTGCACCAA 5305778 36 100.0 38 .................................... TAAAGCTACGCTATCCGCGTCATACCAAGTGTCATTTA 5305852 36 100.0 36 .................................... ATCATCTTCAATATTGAAGTAAACAGCCATGTCTTG 5305924 36 100.0 37 .................................... ATCCAGGCATGGCATACCACTTAGATGTACCGCCGAA 5305997 36 97.2 0 .................................T.. | A [5306029] ========== ====== ====== ====== ==================================== ======================================================= ================== 10 36 99.7 39 CGCTTTAGGCTTCTATGAAGTCGAATAAAAATGGAA # Left flank : ACCACGTCATGCAGATGTGACTAAAAATAGTCGTCTGTTTCGCAAGGCTGCCCAGGTAATACTTGCAAGTCGGGATGAAGAACTTAGTAAGGAGGTGGAATCTGCTTTACTGGGGTGGTTGGATGCTTGGGAAAAGTGGGCTTGGTGGGTTGAAAATATGGATAAAGAGGTGGATGATAAACCTCTGGGAACAAAACCGGAAGATTTGGCGAATTTGTTACGTTTTAGTGCGTTTTTGGTATCGCGGCGACAACAGGAGGTAAATTGGGGGAAGTGAAAAATAACTTCGTTTTACTCTTTTGATTGACAGTTGCGCGGATGAAATAAAATGGCGAAACCATTATTCTATCGTTCACATCCGCGCATCGTTACCCAGTAAGGATTTCAGGCGTTTAGAAGATTGTTTATTGACATTGATTCTCATTTATGAAGGACAAAATTTGCCATCCGCGCAAACACCTGGTAAGATTGTCTCTGCGTAAGGCTTTCAGAACCTTGCT # Right flank : AGGGTGTAGCATTGCTAAATCCCTACAAAAATCCACAAAATTTATTAACTCATCAATTATTTAAACCTATGCAATGGTATGTAATTGAACCTCTCGATATCCTCTTATTTCGAGAGGCCAAACCGTTTTCACCAGGAGAAGGGGCTTGGGCTAAAAGCCTTTTCCCCCCAGTACCAACCACTGTTTTTCAAGCCTTACGTTCAATAGCAGATAAAACCAAAGACTTACAATTTTTTGGAGCATTTTTACTCTACGAGGAACCAGGTAAACCACCAGAAATTTATCTACCCACGCCAAAAGATTTACTCGGTGTGACAATTCAAGTAGACGAAGACGAACAACAAACTATTAGCAAAGGTAAAAAATCTCAAAAATGGCAACGACTCACTTGTTTAGAACCATTAGACAGGGAAAATCCCCAATGGAAACATCTAGGATTTAATCCAGATTCTTTTCCAGAAGCGGGTATTTCCCCAATGGTAACACCCGTACTTGTAAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTTTAGGCTTCTATGAAGTCGAATAAAAATGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //