Array 1 165227-163547 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOW01000006.1 Salmonella enterica strain BCW_4896 NODE_6_length_279516_cov_3.84447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165226 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 165165 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 165104 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 165043 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 164982 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 164921 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 164860 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 164799 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 164738 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 164677 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 164616 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 164555 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 164493 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 164431 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 164370 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 164309 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 164248 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 164187 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 164126 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 164065 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 164004 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 163942 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 163881 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 163820 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 163759 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 163698 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 163637 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 163576 29 93.1 0 A..............A............. | A [163549] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182523-181397 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOW01000006.1 Salmonella enterica strain BCW_4896 NODE_6_length_279516_cov_3.84447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182522 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 182461 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 182400 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 182339 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 182278 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 182217 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 182156 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 182095 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 182034 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 181973 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 181912 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 181851 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 181790 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 181729 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 181668 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 181607 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 181546 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 181485 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 181424 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //