Array 1 114171-113784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035712.1 Zymomonas mobilis strain ZM4* chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114170 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 114110 28 100.0 32 ............................ GCCGACAGTAAAGGTAAAAGGGTTTTAGCTGT 114050 28 100.0 32 ............................ GTGAAGATATTAGCTACGATATGACAGTTTTG 113990 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 113930 28 100.0 32 ............................ TTGCACGGCAGGAGCATTTTATGGCAGCAAAC 113870 28 96.4 32 .............C.............. TTTACACTACGGGCAATAATCGTTCTCGGTAT 113810 27 85.7 0 .............C.......A.C-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGATGCCGCCGCCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGGCGAGCTGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACGCCGCCTCAATTTTTGCCCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCTTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : TTATCAAAACCGATGCCGATCATATCCCCACAGGCAGCCTTCAACATAAAAGCATTTAAAAACAACTACTTAACCACCCACATATTATACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAGAGCAAACGGCCTCACGCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCACTTTTCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTGCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGATA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1242953-1243467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035712.1 Zymomonas mobilis strain ZM4* chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1242953 28 100.0 32 ............................ TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC 1243013 28 100.0 33 ............................ AGATGGAACAAATGTGTGGTGGGAAAATACTTT 1243074 28 100.0 32 ............................ CCGTGCGTCATAGACACCGGAAGGTGCGCCGT 1243134 28 100.0 32 ............................ TTCTCAAAAAGGAAAAGAAATTGGAACAGATT 1243194 28 100.0 32 ............................ GTCGAATAATTTTAAGCGTGAACCCGTATCAG 1243254 28 100.0 33 ............................ ATCGAACTGCGTGCCTGATAGCCGATACGCTGA 1243315 28 100.0 34 ............................ GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC 1243377 28 100.0 32 ............................ ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG 1243437 28 89.3 0 ............G.............TT | GTT [1243456] ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.8 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAAACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATATCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAATATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCGATTCAATATGTTACATATGAGCATATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTTATTGCATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTAGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1590354-1591002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035712.1 Zymomonas mobilis strain ZM4* chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 1590354 28 100.0 32 ............................ GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC 1590414 28 100.0 32 ............................ TTGACGCTGTGAGCGTGACGATATGCTTTCAC 1590474 28 100.0 33 ............................ ATCGGGGCATAAAATAGCGACTTGCTCACCGAT 1590535 28 100.0 32 ............................ GTCTGGCTGAAATGAGGTCCGACGATTTGCAT 1590595 28 100.0 33 ............................ ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT 1590656 28 100.0 33 ............................ ATATAGAAGATTTATCAGATACGTTGAGAATAA 1590717 28 100.0 170 ............................ AAATGCAAGCAGAAAATGCGAAATATCAAGCCGAAGAAGATAGAAAAGCCGAAACTTTGGCTCTTGGAAAAGCTAGATCAGAAGTAAAGAATTAACCTAATCCTTGAGAAGATTCAAAATCTTTTATAAATACTGATTTTTAAAAATAAAAAGCTGGAAATAATCCACAT 1590915 28 100.0 33 ............................ ATCCGCAATTTCTGGAACATGATCTTGCTGACT 1590976 27 82.1 0 .............T......A..-.T.C | ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 9 28 98.0 50 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACAAAAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATTGAAAGGCCTATTCCTTTTGCAGATGAGACAGTGAGAATGAGGTTTTTATGGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTTGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : CTTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGATATTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCTTCGGTACGTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGATTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGA # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.73, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //