Array 1 20101-22049 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUZ01000120.1 Pseudomonas aeruginosa isolate 203.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20101 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 20161 28 100.0 32 ............................ ACGAATGCGAGTGCGACGGCGGATTCCACTAC 20221 28 100.0 32 ............................ ATATGCCGAAGCCGGCAACTTCTTCTGACTCG 20281 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 20341 28 100.0 32 ............................ TCCCTGAGCGGGAAGGGAAGGCCATCAGGCCA 20401 28 100.0 33 ............................ ACTGGGTGCGGTCTCGGTACTCGGATGTTGAGT 20462 28 100.0 32 ............................ GTAGCCGACCGCTTGAACGACACCGCGAACGT 20522 28 100.0 32 ............................ TGGCTGCGTGCGGGCGAGTTCAAATGTAAGTC 20582 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 20642 28 100.0 32 ............................ TTGCAGCGTGAACATCGATGGCATGCATGTCC 20702 28 100.0 32 ............................ ATCACGATAACCGGTCACCATGCGCTTACGAT 20762 28 100.0 32 ............................ TTTACGCCATCAGCGGGGATCGATGGGGCCTC 20822 28 100.0 32 ............................ TGGGCATCCTGCTGCTGTCCGGCACGATGGTT 20882 28 100.0 32 ............................ TGAATCCCTCCTACGACACTTCCAACGTATTG 20942 28 100.0 32 ............................ GTCAACGATGAATATGGCATGACTATCTCGAA 21002 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 21062 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 21122 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 21182 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 21242 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 21302 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 21362 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 21422 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 21482 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 21542 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 21602 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 21662 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 21722 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 21782 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 21842 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 21902 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 21962 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 22022 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31263-30575 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUZ01000120.1 Pseudomonas aeruginosa isolate 203.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31262 28 100.0 32 ............................ TTGTGGCGCAGCATCCGGCGCGGATGGGACTG 31202 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 31142 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 31082 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 31022 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 30962 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 30902 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 30842 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 30782 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 30722 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 30662 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 30602 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //