Array 1 181078-181707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFJB010000002.1 Pasteurella multocida strain PM2 NODE_2_length_282957_cov_80.588962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 181078 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 181144 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 181210 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 181276 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 181342 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 181408 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 181474 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 181540 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 181606 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 181672 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 499367-497060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFJB010000001.1 Pasteurella multocida strain PM2 NODE_1_length_596940_cov_85.018823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 499366 28 100.0 32 ............................ ACAACAACTAATATTTTAAATCTCATACAACA 499306 28 100.0 32 ............................ ATTTCGACGTCTTACCCCCCGTATATAGACAC 499246 28 100.0 32 ............................ TACAGGCAATCTGCATTTCATCGTGAACCCAT 499186 28 100.0 32 ............................ CAGATAACTTAAAGTGGTACGACCAGTCAACT 499126 28 100.0 32 ............................ TTAACTCTTTGATATCTTTATGTTTATCATCA 499066 28 100.0 32 ............................ AATGCCTGTCCGCTTGGGCGCAAGTATCAGCC 499006 28 100.0 32 ............................ ATATCACGCTGGGTCACCTACAGATGCCACCT 498946 28 100.0 32 ............................ CAGTTAGTTTGCTTAGGTTTGCTTAGAAGTGA 498886 28 100.0 32 ............................ AGCTATGGCGGACGGTAAGTTCACTTTCAGGT 498826 28 100.0 32 ............................ AGTCAACTTAGAGAGATAACTTAAAGAGGCCT 498766 28 100.0 32 ............................ TCGCTTTGTTTTATTTAATTTGCGACCTTTTA 498706 28 100.0 32 ............................ ATTTATATTTGTCTGCATTTCCTCGCTTTGTT 498646 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 498586 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 498526 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 498466 28 100.0 32 ............................ TTAGTTATACCTTTAGTTATACTCCTTTTCTT 498406 28 100.0 32 ............................ TCCAGATAACTTAATGGTCTAACTTTTAGTCA 498346 28 100.0 32 ............................ CCAGATAACTTAAAGAGGTCTAACTTTAGTCA 498286 28 100.0 32 ............................ TTATCCACAACTTCTTTAGCTACAAGCTTTGC 498226 28 100.0 32 ............................ ATTTCGAGCCAGTGCGTGCTTAGTATATAGTT 498166 28 100.0 32 ............................ AGACGGATTCCCTGTTTGGCAAGAATATTTTG 498106 28 100.0 32 ............................ TTTGTGAGAATCTATTAGAGAATGGGTCTGAG 498046 28 100.0 32 ............................ CAAATTGGGGCGCATACACAATTTCACAACAA 497986 28 100.0 32 ............................ TATACGGCAGTTAACGAAGGAAGGTAGGCACT 497926 28 100.0 32 ............................ AAACAGGGAATCCGTCTGGTGCGGTCCACGCT 497866 28 100.0 32 ............................ GACTACCTACTGTTCACCTACCGTTCACCTAA 497806 28 100.0 32 ............................ CTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 497746 28 100.0 31 ............................ TGGATGCGCTCTCTAATTCCAAAGCGACTTG 497687 28 100.0 32 ............................ CAGATAACTTAAAGAGGTCTGACCAGTTAACA 497627 28 100.0 32 ............................ AAAGCTTGTCCGAGCTTTAAAGCAGACGTCTG 497567 28 100.0 32 ............................ TCACGGTGCTAATCACTAAGCCAATTTTAGCA 497507 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 497447 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 497387 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 497327 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 497267 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 497207 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 497147 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [497137] 497086 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51672-50083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFJB010000012.1 Pasteurella multocida strain PM2 NODE_12_length_67735_cov_68.332727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51671 28 100.0 32 ............................ TCTAATAGGAAAATAAAAACATGAAACAACAA 51611 28 100.0 32 ............................ AATTAAACTATTGAAACTTTGAGTTTTCAAAT 51551 28 100.0 32 ............................ AATTCATTGAGGGGCATGGTAAACGTAAGAAA 51491 28 100.0 32 ............................ CTGGGGATTGACGATAGGTGAACGATGAGGGT 51431 28 100.0 32 ............................ TTTAATGTGGTCACTAAGTTATCAGAATGACC 51371 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 51311 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 51251 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 51191 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 51131 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 51071 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 51011 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 50951 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 50891 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 50831 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 50771 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 50711 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 50651 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 50591 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 50531 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 50471 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 50411 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 50351 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 50291 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 50230 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 50170 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 50110 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //