Array 1 37498-38965 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSO01000025.1 Pseudomonas aeruginosa strain BCW_7428 BCW_7428_1_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37498 28 100.0 32 ............................ TTGACCTGCCGGGGCTTCCGAAGGGGCCTGCT 37558 28 100.0 32 ............................ ATCAACGGAGCAAGCGCATGATGAAGCGGGTT 37618 28 100.0 32 ............................ TAAAGAAAGAGCAGAACGGCCAGCCCGCGCCC 37678 28 100.0 32 ............................ TAGATAATCTGCTTGACGGCCTGGCGGTTCTT 37738 28 100.0 32 ............................ TGCAACCACAAACGCGTTCTCCGGCTGGAGTT 37798 28 100.0 32 ............................ AAGCACCCGGATGTGCGGTGCACCCTGATAGT 37858 28 100.0 32 ............................ TCAGACCGGTAGACCAACCCGCACGGTTCCGC 37918 28 100.0 32 ............................ GGCTTCCTTCACGCCAGCGTCGCTCTCGATCC 37978 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 38038 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 38098 28 100.0 32 ............................ GCGAGGGCGTCGACGCACGCGACCGCGGCGAA 38158 28 100.0 32 ............................ AAGAACGGCTTCAGGCTGAAGCTAGATGCCTG 38218 28 100.0 32 ............................ ACGCTCGGGCCGGCCGCCAGCGGCAGCTCGGC 38278 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 38338 28 100.0 32 ............................ TCAACGACAAGGAGCTGCTATCCATTCTCGAC 38398 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 38458 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 38518 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 38578 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 38638 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 38698 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 38758 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 38818 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 38878 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 38938 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49138-47490 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSO01000025.1 Pseudomonas aeruginosa strain BCW_7428 BCW_7428_1_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49137 28 100.0 32 ............................ TCTCCGGGCGCGCCCTGGTGCCATCGTTACCG 49077 28 100.0 32 ............................ ATGTCATCGGCTTGGCTGATGCTGTCGGCGCG 49017 28 100.0 32 ............................ TTATTGCCGCGCGGGCTTGAGTCCGCCAGAGA 48957 28 100.0 32 ............................ GTACCGGCCAAACACCTGGCCGGGGCTCGGGT 48897 28 100.0 32 ............................ ATCAGTCGATCCGATCCAGCGTGCCGTTGAGC 48837 28 100.0 32 ............................ TGCCACCCTGTCCGCCGTCGCAGTATCCGTAC 48777 28 100.0 32 ............................ ATGTCCCAGAGCTTGCCAAGCTGCTGGGCCGC 48717 28 100.0 32 ............................ TCGTCGTTGATGCTTTTCAATATCTTTGATGC 48657 28 100.0 32 ............................ GATCGACCTGGTGCATACGCTCCGCCTCGATG 48597 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 48537 28 100.0 32 ............................ TCTGCGGACGCCAGGCGCCCGGCCAACACGCC 48477 28 100.0 32 ............................ ATCACGAAAACGCGGCGGCCGTACCGGTTGCC 48417 28 100.0 32 ............................ ACATGCCGATCCTGCTTAAGCGACGGGATAAT 48357 28 100.0 32 ............................ AGCACCAGGACCGAACCAGGCGGCGCAAAGTC 48297 28 100.0 32 ............................ CGTCCTGGACTACGAGCACCAGACCCTAAAGA 48237 28 100.0 32 ............................ TCGACAAATATCCTGCAAAGCGAATCAGCCGT 48177 28 100.0 32 ............................ ACAACAGCCGTTCGTCGGAGTTGACCATGCGT 48117 28 100.0 32 ............................ TCGGATTGGAGCGAGTTGGAGAAGCTACAGAC 48057 28 100.0 32 ............................ TCTCCGCCCCAGCTATTGCCGGGGAGGGCATG 47997 28 100.0 32 ............................ ATAAAGCACTTCCACGCCGCGCTTGATGCTCT 47937 28 100.0 32 ............................ ACCGCCGGCCAGCACACCCCTTGGTCGTTCGC 47877 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47817 28 100.0 32 ............................ AATATGAACATTAGGTACATATCAGGCGGGAA 47757 28 100.0 32 ............................ TTCACGTTGGGCGTAGGACAGCGCGTCCTGCC 47697 28 100.0 32 ............................ AACAGCATGGCGTCCACCCGTACCGCCCTCAT 47637 28 100.0 32 ............................ TACCGTGGCGACGTTGCAACCCGCTGGTCCGA 47577 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 47517 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //