Array 1 2966-2213 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757657.1 Nostoc sp. KVJ20 contig_121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2965 37 100.0 36 ..................................... TCAGTATACTGCACTCCTTAACACGTATGTACTAAA 2892 37 100.0 35 ..................................... GGTGCGGGAGTGGGTGGTGCTTATTTATATAACAA 2820 37 100.0 37 ..................................... GATCGCCAAATATAGCGTGTTGTTTCCACCCAAACTC 2746 37 100.0 33 ..................................... GGAAAGAGAGACAATTGCCCCTCTAGTTGACAA 2676 37 100.0 34 ..................................... TTCTGTAGTTTGCTTAAAAGCGATCGCTGACCAT 2605 37 100.0 35 ..................................... TGATTGTTCCGATCGCGATGTGCTGCTAAGAAAAG 2533 37 100.0 34 ..................................... AATCTAACTGGCCGCCCATCCATTAATTTCGCTA 2462 37 100.0 36 ..................................... TTGCTGGAGAAATCCAGGCACTTAATCAGAAAACTT 2389 37 100.0 35 ..................................... GATGCAATATAACCACAGGATGGACACTTAAACCT 2317 37 100.0 32 ..................................... CCAAATCTGAAACTATTACGCACGCAAAAATG 2248 36 73.0 0 T..T-..T.....G.........A........ATC.T | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 97.5 35 GTGACAACAACCCTCCAGGTACTGGGTGGGTTGAAAG # Left flank : AGCAAAAGAATTAGCACTTTCTGCTTACCATCTCCGCCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGACAATAAAATAATAAATAGCGCCGCAGTTAATGCTGCTTGCAGCCTCTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACTGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTCGAACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTGAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAGAGTTCCGCGCAAGTTCCAAATACCCTGCCCCATCTGAATTTATCGTTTTTCCATCCAGATATGATTCTTGTGACTGAGGCTCAAATAGGAAATTGGGAGACATACGCGCTGAGGAAATCTAGAAACGTTGCCCTACAATATTTTTAAACTGAGTGG # Right flank : AATTTTTATTAGGGAGGGTTGAAAGAGAGCGCTACGTTGACATTATCGCTATAGTCTCTGTAAATAAATGACATTAATCTGTCACTGGTACTTAAACGACATCAATTTGTCCCGACGACAGTTAATTAGTCCAAACGACATTAATCTGTCACCGACGACAAATAATTAGTCACTGTACAACAAAATGGACGTAACTGGATTCGAACCAGTGACCTCTACGATGTCAACGTAGCGCTCTAACCAACTGAGCTATACGTCCTTAACCACACAATTATCAATATTAGCATATACTTCTTTGACAAGGCAAGAAAAAAAACTAAATTAGGCGAACTCCATGCATTACCCGCTACGAATGAAAGAAAAAAGTCAAATTCTCTTCCCTTTTGCTGCAAGGAAGACGGGCTAATTTCCTGAAAAAGTATTTAAACTTCTCGAATCCAAAATGCTAATCCTCCTCCACGACCACGAGCCGCAATGAAATCTTCCGTCACTAAAAAGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAACAACCCTCCAGGTACTGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.80,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 32354-32171 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757663.1 Nostoc sp. KVJ20 contig_127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 32353 38 100.0 37 ...................................... TATTACGGTGCGTGGGGTCGTTATTACGTAACTCATA 32278 38 100.0 32 ...................................... CCACAAGCGCAACAGAGTCTTTATTATTGGAT 32208 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 100.0 35 ACTTTCAACCCACCACCTAACGAGAGGGCTTTGGAAAC # Left flank : TCAAGGGGAATTAGCTCAGTTGGTAGAGCGCTGCGATCGCACCGCAGAGGCCATCGGTTCAAATCCGTTATTCTCCATGTGTCCATTAAATAATTATTGTCACTTTTAAAGAATTAATGTCCATTTTTTCCAAGTTCAGGGGCATAAGTTACGTATTTTCGCGGCTTTCAGCAATTAAATCAGTTTTAAAGAATTATTGTCCAGAGTTGAAACCAGTTTTAAAGAATTATTGTCCAAAATCAGCCTGTAAAACTCGGCTAAATATATGGTTACTAATTTAATTTATTACAGCAGGCTCAAGGTTATTGAATTACAAGAGTAGCTTTAAAGCCCTTTATTTGCAGTCTAATTACAAAAATATACTACCTCTTGTTTTGCTGTTTTCACCCAAGCAGAGGCTCCACTGCTACATAGCTGCGTTTTACGTGCGATCGCAGCACTCCTTTCAAACCACCCTAATACAAAATTATATAACCAAAGCGCCTACTTCGGGGATCATA # Right flank : CGCACCCGTGAAAACTCTTGCCAACAAGGGCTTCTGAAGGCAAAATTGACAAGCCTCCTTTAATTCCTATTTTTTACAGCCAATGAATAAAATTTTATTCATGACTAAAACAGTAATACCCAATGCAGACAAGATTTTTGGACATTTGGCAGCGCCCCAGGGATTTTGCCCCCGCTTTGAGCTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCGTGACGGTATACCCGTACCCTTACTTTGTTGTAAAGTAAGAGGTAATGATCCTCCTCATAAAACCAAAATCTAAGATTTCAGTAGTACAGGCCGCTCTGGCACCTAACACCAAGCTAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGGAACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTACTTTCTCATCTAACAGCAGTATTACCTTACCCAAGCAATTACCACTAACAAACGCTTAGATGATCGCACAGGTAGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTCAACCCACCACCTAACGAGAGGGCTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 184-437 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757701.1 Nostoc sp. KVJ20 contig_165, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 184 37 100.0 34 ..................................... ATTAAATCTAGCAGACTAAAATCCGAGATATCTT 255 37 100.0 38 ..................................... GTAAAAAGTTAGTCAGGGGCAACGCATAGTAATTGCTT 330 37 100.0 34 ..................................... ATGGGTCTAGCGTTGCTACGGATACAGCATTTAC 401 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 36 GCAACTTGGGTTAATAGGGATTTTAAGTAATTGCAAT # Left flank : AAGTTACAAGCTTTTATTTTTGCTTACACTCTGCAACAAGCTTTTATTGACTAAGTTGCAAATGTTACTCTCTATTAAACTACACTGAACATTCCTAATGGCATTTTTATAGTGGTTGGAGTTCGTACAACCCTTATTTACTGTGCCTACACTTTCCATCTCCTCTTTTGTATTCTATTACCCG # Right flank : TGGCTGGTATCTGAAAGCCTTGTGTTATTTGGTTTTCAAGGTTCGGTTGTGCGAATGCAAAAATCATAACACGAGGAATTGTGATTTGGCTAGAGGCAAATGGCTGAAAACTAGTCCCCATAAGGTGCGCGGATAGTTTAGAAATGCGATCGCTCTCAAGTTGTTGCAGATAAGCCAATTCAGCCATTTTTGTAGTTACCTCTTCCCCAACACCTACCCATCCGCGCATTTGGCGAAAAAAACTAATCCGATTGGAAAGCTACTTACTAGATATCCTACTCGATTAGGTTAGCTGAGTTCAGGGCTATAACTGATTTGGGCTACGCCTACGCAATACCAGCACCCCCATAACCAACTTTATTTGGCAACGTCTTCAAAGTCTGTTATCGCACAAGCAAATTCTCTAAAAGCTGTTTTAATCAGAACCTCTTTCGTTCCCCTTTCCAGCGAAGAATTGCGTATAAGGTCTGTTAATTCTATGAACAACAGAGAAAACATAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAACTTGGGTTAATAGGGATTTTAAGTAATTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 18475-19156 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757739.1 Nostoc sp. KVJ20 contig_203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 18475 35 94.3 37 ..............................C..G. CAGAAGATAGGGATTACTGGGCAAAAATAAGATTGCA 18547 35 85.7 36 ..............................CTGTT GTAACTTGCGGTAAAATTGACTTATCGTCTATTGCA 18618 35 100.0 37 ................................... TCTATGACAATATAGAGTTAACAAATCATTTCATTAT 18690 35 100.0 35 ................................... AATGTAAGCTAGATGAAAGTACAGCAACAGTAGAA 18761 35 100.0 35 ................................... CACATAAATAGGCAACATCAACATCATTGATTGAA 18832 35 100.0 38 ................................... CAAGAGAGGCATTCAAACTGTCAATCAATACTAATTAT 18905 35 100.0 37 ................................... TATGAGAACTCCATCTTTCTTTAAATGATCTACTAGA 18977 35 100.0 37 ................................... AACATCTTACGAATGCCCAAAAAAAATGACCGATTAT T [18978] 19050 35 100.0 37 ................................... GTAAACCTGTATTCAAATAGGCGTTAGTAAAGGTCAT 19122 35 74.3 0 ........................ACTCAA.TTG. | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 95.4 37 TGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GGAGTTCTCTTTACTGACCTCGCTTCCGATTTCGGGTCTAGCGAAACCGTGCTAGGAGAACCAGGAGTGTTGCGAGATAAACCTGGAAGTGGCTTTGGTTACGGCTTAGGATTGCGTGTCAAGTCATCCTTTGGGCTGATTCGAGGCGACTTTGGAATTAGCGACCAAGGAGAATTGAGATTTGAAGTGACTACAGGTCAGCGATTTTAATCTTCTTTCTGCTTAGGTTCCTGGATATCAAATGCGCGAAAGGGTAGGTGTAGAAATTCTACAGCCTCAAAAAAGTGTTTCTATCTCAATACCAGCAAGCATTTCACCCCACTTGTTGCCCAATTGCCATCCGCGCAATCTCTGAAATGCTTACAAAACTTGAGTTTCAGCCCTCAATCTTTCTCGATACTCTTCCCAAAGGAATTCTCTAATGCTATTATTGCTCTAGATTCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGGCTTTCGGGTTGCCGCTATTGCA # Right flank : TAGTTACATACCAAGAAAGATGACATAGGGGTATAAAAACAATAAAATCCCTCCAGACAGAAAATTAGGAGGGAAATATGTTAAATGAAATAGTTACTATCTATTCTGT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 2777-2452 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757746.1 Nostoc sp. KVJ20 contig_210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2776 37 83.8 33 AC...G..A.A.A........................ CAGTTCTCGGAGACATCGGTGACTCTGCAAAAG G [2765] 2705 37 100.0 36 ..................................... AAAATCTATCAAAAGCAAAAAAATGGAAACTCTTTC 2632 37 100.0 32 ..................................... TTACCATTGGTTTTTGCTGTCATTCTTGTAGG 2563 37 100.0 38 ..................................... CACTTTCTGCCAATGCGCAGAAAGTTGGAGAGGAAATT 2488 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 96.2 35 GTTTACATCCCCGTTAGGGGAAGTGGTTATGTAAAGT # Left flank : GAACGCTTGCAGATAGTGGCTGATATTCTCGCCAAGAGTGTTGTGCTGTCTCACTATGAAACCAGCCTAGCGACTGTATTTGATCAAATTGAACCGTTTGCAGCTAGTCTCCAGCGGGAAAACAGAAGTAGACACCAGAGCCGGGAATTACTGCGTCAATTAGGGACTACCTTATTAGTTCAACATAAAATTGTGGGTCAAGTAGAGATTATCGATAAGCCGGAGTTACTCTGGGAATCCCCACAGCTAGAAAATTTATATCTGCGCTTGGAGGATGAATACGAAATCCGTGAGCGTCACCATGCCCTGGAACGTAAACTAGATTTAATTTCTCAAACCGCCCAAACAGTGCTGGAGTTCATGCAGCATAGCAGTAGTCAGCGTGTAGAGTGGTATGTGGTGATTCTGATTGTGGTAGAAATTCTGCTGTCACTGTACGACATCATTTTCAAAGGCTAAATTTAGGGTTGTGATACCAATTGGCAATTCGCAATTAAAAA # Right flank : GTTACCTTTTAGAAACCTTACTGGGAGCGGGTTTCAGATACCCCAATCGACACACCTCTTGAAAAGTACAAAAAATTTTCAAAAAAGTATCAATTTTGAAGTCTGAAAAGCTTACTGCGTAAGGCATCGACACACCTCAACGGAATTATGCGGTTTTCAAGGTTCGGGCGAGGTGTGTAGATGAGGATAAACACATTAAAAAAAAGGGTATAGCACGTTACCTATGATTGTCAAGTATTAGGTTCATAAGAAGAATTCAGAACTCAGGATTCAGTATTCAGTATGAATTCTGTACGAGTGGGTGACGAATATTGGTTAAAACCGTACAACTCTTAGAGACGCGTCCCGCTACGCGCTTTCGTCCCTATTAGTTCGCCAAGTGAACTTGGCGGGGTAAAGGGTTTAAATCCCTTACCCTTTTCCCTTTCCCCTTTCCCCAGATTGTTAATTTTGCCCTACCTCGCCAAGTGCAGGTGTACGCGCAAAATTCCTTGAATTAC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCCGTTAGGGGAAGTGGTTATGTAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 3157-2457 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757771.1 Nostoc sp. KVJ20 contig_235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3156 37 91.9 35 T....A........A...................... ATGATAAATGCAGAGTTAGCTAACAGATTTAAATC 3084 37 100.0 34 ..................................... TTGACATACCCCGACATTATTGAATCATGTACCA 3013 37 100.0 36 ..................................... AAATAAATGCCCACACTGCGAGGAAGGAAAGGTTTA 2940 37 100.0 35 ..................................... CAGTAACTTTATGTGGTTCTACTAAATTTTTCATT 2868 37 100.0 37 ..................................... TTCAAGCTATTTAAATCTTCAACTGTTTTGAGTTCTA 2794 37 70.3 36 ..............CA..T.T.C..AAG..AA.T... AAAAAAGCTACTTGAGGCTGCTAACGAAACCGGATG 2722 37 70.3 36 ..............CA..T.T.C..AAG..AA.C... CCAAAATATGGATTTATTATCAGCTTCATCCTGAAA 2650 37 70.3 43 ..............CA..T.T.C..AAG..AA.C... TAAAAAAACTATCAAAAGACTGTGATCTATATCAGCAGTTTAT 2571 37 70.3 42 ..............CA..T.T.C..AAG..AA.C... TATTACTCCAGTCAGTACGATTATTACTAACAGAATGACTAC 2492 36 70.3 0 ..............CA..T.T.C..A-G..AA.C... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 84.3 37 GTTTCCATTAATTCGCCTCCACATAGTTAGTGGAGAC # Left flank : ATTCACAATTTTTTTAACGGATGATTCTCTTAATTTTTTTGGTGTCATGAGCGATAAATTAACCACAGCATTACTAGAACTTTCAATAAGTCCAGTTAAGCAAGACAGATTGGCTATCGAACGCCTAGAAAAACAGTACGGTGCTTCTTTACTAGAAATTATTAATCAGATGGAAAACTATGCCATCATTCACCAATCTATTGAAGACGAAAGAGCTAAACCCAGAAATCAGTTGATTATTGCTTGCTGTTATGGCTGTCTTTGGGGCGCAGTTATCGGAATTGCGACGTTATTTATCAAGCCTAATGTTACTGTAGCGGCGATTGGGTTGGGTTTTACGGCTGGAGTGTCTGGGAAAATGTTGGTTCAAAAAGGGGAATAAATCGAAGTAGGTGAAGATGGGTTTTAATTTAATTATTTAGCTTATTTTTTTTGATTAATTGGAATAAAGATGGCGTGAACTAAATTTATTTCCCGTCGCGCCACCAAATTTATGATTC # Right flank : CCTTCAATTTTAGACCCTTACTCAGCAAGGAATCCAGAAGCCGTTTCCGAAGGTCACAAAAATTAATCGCCAATCTGCCATTTCACCAATCACCAACATACCCCAAACCCTTACTCTGTAAGCAACCTAAGGTCACAACGCTCAAATAAGCATTTCAGCCATTTTCCCTGAACCTCGGCACACCGCTTCAGCATCCGTTTTATTGGGGAGCATGGATTTGTCAGGGAAGGACAGATCCTTTAGTCGGTACAGGAATTTTTAACTAGTACCGCAGCGCGTAATTCATAATTCGTAATTACCGTACCATAAGGGTTTTATTGATTTGGAATCGGTGGTTGATTTCCGCCGTGCTGTACTAGGTTTTCCTTACAAAAAAGGCAGAAGGCAGGAGGTTAGGAGTATCAATTGAAACTAAAGTTTCAGGGTCTAGAGCCACGTTCATAAAAAGAATTATACCGAGACGCACTGCCACTCCAGATATTGTTTCGGGGCTGAAGTCC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.26, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCGCCTCCACATAGTTAGTGGAGAC # Alternate repeat : GTTTCCATTAATTCCACTTCTCCTAAAGAGAAGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 529-1210 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757783.1 Nostoc sp. KVJ20 contig_247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 529 37 100.0 37 ..................................... GAGTCTGGGGAGTAAACTGCTTTTGATAGGAGTTCAG 603 37 100.0 35 ..................................... CCAAAGGGAAAAGTGTAGCTTTTTGAATCTCCTTT 675 37 100.0 39 ..................................... TTTGAATGATTGAATCAATTACAGATTCTGCCTCAGCAA 751 37 100.0 32 ..................................... TTACCAAGTAGTTATTATTCTTGTCAGACCGG 820 37 100.0 35 ..................................... TTATCAACACTTACGTTTAATTCACGCTCAACAAT 892 37 100.0 35 ..................................... TGATAGGACTTGGGCGATCGCTGGATGTACCCAAG 964 37 100.0 34 ..................................... ATCCCAATCAAGTACCGGGGTTGCTTGCCGGACT 1035 37 100.0 34 ..................................... GAATGATTACATGCCAATCAAGACCTTCGATAAC 1106 37 100.0 31 ..................................... TACTCTGCAATGATGAATGATTGGTCATAAA 1174 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 35 ATTGCAATTAACCTAAATCCCTATTAGGGATTGAAAC # Left flank : TCTAGTACAGAAACTCAATTCTGAACTCGATGATGAACTGAGTCTTTGGTAGCTTTAGGATTTGCTAAAGCCGGATGCTTGGTTAACTTGCTTGTCCGGTTTGTCGGGGGGAAAGGGATAGAAATATCCCTGCCCTACCCATTAAACTTTTGGTTTTGCTGGGATTTTACATAACTGTTCGCACTTTACAAAGTCATTGCCCCGAAAGGGGATAAAACCCTGCTAGAATCCGCCTTAAGCATGGCTTGCAATCAGACTTGTTTTTTGCAACAGTGCGCGGATATGTAGGTGTACAAAAATAACAATCAGCAAAAATCGCTGTATTCCTCTATGTGTAAGCATTTGAGCGCGAACGCATTGATCAACCATCCGCGCACCTTATAGACACTGGCTTTCAGCGATTTACATCTAGTCATTTTCAAAACAGTTGTGTTATGATTCTTGCATTCGCGCTATTGAACCTTGAAAACCAAATACAGCAAAGGTTTCAGATGCAGTCC # Right flank : CCAGTAGTAAAGATTGTCTAGTGATTTGAAAAAATTTAAGTTATAGAGAAATTACAAATCACCCCAATCAAAATTCAGAAAGCGTCGAGCATTCAGCTTGGTATATTTTTCAGTGTGTTTGATATCGCGGTGTCCCAGGAAGTCTTGGATTTCCCTGGTGTTATAACCCTGATTCACCAGATAGTAACCGCAAGCATGGCGCATCATGTGACAGTGAACTTTGATATCAAGCCCGGCCTGTGCCGCTAGTCGCCCAAGCAGCTTTCGCACTGCATCAGTAGACATCACCTCACCACGCTCAGAAACGAAAATATATTTGCTATCAGGTAACATCTCTCTGAGTTCTTTGAGCAAAACTAATTCATCATCTCTCAAGGGATGCACCCCAGAGTCACTGCCCTTTTCCCTGGTGATGAAAATCTGACGTTCGGCCCACATCACTGCATCCCAGCGCAACCCACATTTAGAACCCACAGCTTCCCCCACCCTAAGACCGTGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 22907-23087 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757773.1 Nostoc sp. KVJ20 contig_237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 22907 36 100.0 37 .................................... ATACTCCCCTGTGGGCAGTTTGCTTAGGAGGTAATAC 22980 36 100.0 37 .................................... GAACTAAATAAATCCCCCTCCATGACCAGTAAAAAAT 23053 35 88.9 0 ...............................GTG.- | Deletion [23088] ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 96.3 37 GTTTTAAATCTCTTACCCCTCACGGGGATGGAAACA # Left flank : AGTTTGGCAAGTTGGGATTAACCAGCATCGGTGATTCCCCGCAACAAGCACAAGATATTTATAACAGAGTTGTGAAAGTTCTGGATGAAGAAACCCGCAGCGAAAATCATGATTTCTCGGCGTTTTCAGATTATTCCTTTCCCGTGGTTTGGGATGAGCATAGTTAAGAATAGGGAGATTGTATTTTGTCGGTTGCTATGGTATGGTTTATACCAACAAATGCACCATGAAAATTAAATAAGTAGATACTTTTTACACGCAACCTAATATTTTAGTTTCCTGAAGCCATTGTGTTAAGAAGTGTAAACTGAGGGGGTCGTGCAATGGCTGAAAAGCTTATTGTTTCGTAGACCCCCTCAGATAACTTGCTGTATAAAGGTTTGAGCTACTTGAAGACTATAATTATTGTCAATAATTGTGGTTTGTTGACAGGTAAAATAGACCTCCCTCAGTCTTGCAGTTATGTAAGCCTTATTTGGTAAGCTTTCTGTAAGGGTAGG # Right flank : | # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATCTCTTACCCCTCACGGGGATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 284-886 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757562.1 Nostoc sp. KVJ20 contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================ ================== 284 37 100.0 42 ..................................... AGGTAGATCCGATTCTTCCGACTCATCCAAAAAGGGTGGCAA 363 37 100.0 35 ..................................... AGACATATTCATACCCGGCGACTTATACAACAAAA 435 37 100.0 38 ..................................... ACACTCCAGCCGATTTGGGCCCACTTTTTTCAGATTGC 510 37 100.0 35 ..................................... CTCCTAGTTCTGCTCCTGCTTCTTCTCCTGCTTTG 582 37 100.0 37 ..................................... CTATAAGTTTACCGACCGCCAACGAATCAGACAAAAG 656 37 100.0 156 ..................................... CACACCTGGACTAATACAATGCCGAAAGCCTAAGCGCATTTGCTGACTTGCTTGTGCGATCGTTTTAGGGATAGAATCTGCTTCCATGTTGGAAAAGTTGAAAAAAGTATGAGAGTGATTCATACTGGAATTACAGCTATTTTCAGTAAAGAGGTT 849 37 73.0 0 TG......AC........TA......T.CG......A | G [869] ========== ====== ====== ====== ===================================== ============================================================================================================================================================ ================== 7 37 96.1 57 ATTGCAATTACTTAAAATCCCTATTAGGGATTGAAAC # Left flank : GATTCCCACCAAAAAACATTGCCGCTATCATTGCCGTGGTGATAATTTCTGCATCACTCATTTCACGACGAATATCCTCATCATGTCCAATCGCCTTCAATAGGTCATCTATGACAGAATAGATAGTAACTATTTCATTTAACATATTTCCCTCCTAATTTTCTGTCTGGAGGGATTTTATTGTTTTTATACCCCTATGTCATCTTTCTTGGTATGTAACTAGCAACTTGAGTTATTAGGGATTGAAACGATGCCTCTTGCAGAGATACCGATAACAAAAGATA # Right flank : ATTTCCCATGCTATTTGATGCGTTTAAACACCGTAAATCTCCTAAAATAGAATCCATCAAGACTGACCCAACCTGGCGCGTAGGGTGGGGGACAGTTGATGAAAATTATGAAAATATAGCTTGGCGAGATGAAAAAATTTTTGTAATTTTACCACGCAAGGATTCTGGATTTCTGACGGAAAAATTAGCAATCAGTTCTGGAGGACGATTTGTTGTTGTTGGTGATGTTTGGTTCACTAACCAAGTGCAGTTGCTACAAAAGTTGGGAATTGAACCGGATAGCTTTCAAGGAAGTTCTCTGCAACTGGTGGCCAATCTTTGGGAACGATGGGGTAATGAAAGTCTTCGGCTACTTGTGGGGATGTTTGCCCTAGTGATTTGGGATAGAGAAAAACAGGTTTTGAGGTTGGTTCGCGATCGCATCGGTGTTCGTACCCTCTACTACACTACCACTGGTTCAGTTCGTTGGATTGCGCCTCAACTAAGAACTTTATCACCCC # Questionable array : NO Score: 6.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-2.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACTTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 102-424 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757842.1 Nostoc sp. KVJ20 contig_306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 102 34 55.9 38 ATT.CCCG.A.CTTGGGT................ TGACATATTAATGACCTTTTTGATTATCTAAATAAATC 174 34 100.0 38 .................................. ATCACTGATGATTTGTACGCTTTGACACCTAGAGAATC 246 34 100.0 37 .................................. TATGCCCAATTTGATACTGCAACTACATTTTGTCATC 317 34 94.1 39 .....................C.......A.... TTTTGGCGCTCTGCATCACCCAGCCATGACTTGTTTATT 390 34 88.2 0 .....C........................GTG. | T [400] ========== ====== ====== ====== ================================== ======================================= ================== 5 34 87.6 38 GCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : TAAACTACACTGAACATTCCTAATGGCATTTTTATAGTGGTTGGAGTTCGTACAACCCTTATTTACTGTGCCTACACTTTCCATCTCCTCTTTTGTATTCTA # Right flank : GACTATCGGTTGCACGTAGAGAGTGAGTTCCTCAGAAAAACTCGTGGCAAGTGTCAAATGCCAGTACCCGCCCGAAGGGGCATTGCGGGTAACTGCGATGTTTCAAAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCACAGTTAGGTGAAGCGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTCGTTGAGGCATCGTGAAGAGGAGTTACCGAAAACGGCTGAGACGGTGACAGGGGTAAAGTGATTCTGCCCAATCCTCAGAATCAGTCGACACCTTGCACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGCATCTCTCGCGTGTGCTACGAAGTAACCCCAATG # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.38, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 14-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757586.1 Nostoc sp. KVJ20 contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ====================================================== ================== 14 20 100.0 52 .................... GACAAATTACGCTTAAGTTTTTGAAAAATTTCAAAAGTTTCCATCCCCTTTC 86 20 100.0 54 .................... TCAGATTCAGGTTAGCTTGAATCTGATCCAGCCATTACGTTTCCATCCCCTTTC 160 20 100.0 0 .................... | ========== ====== ====== ====== ==================== ====================================================== ================== 3 20 100.0 54 GGGGCGATGTGATCGTAAAG # Left flank : CCCATCCCCGTGAG # Right flank : GAGTTCACTTCTGGAAGCCTTACAGGGAGAGGGTTTGAGATACCCAAATCGACACCACTTTTTTGAATGTCAATAACTCCCAAGAAATTCTCAATAACTCTTCACCTTCACAGGCTGGAAAGCTTGCTGTGTAAATAATCGACACCACTCAACGAAATTATGCGGTTTTCAAGGTTCTGGCGAGTGGTGTCGATGAGTTCAACACATTTGAAAAAAGAGTATAGCATTTTACCTGTGGTTGTCAAGATTTTGTCAATCTGACTCCTGAATTCTGAATTCTGAATTCTTCTTCAAATCAACAATTTTCTCCTGATGTTTCACAAGCGCCAATACTCACCCAACGGCTAGAACCATCTTCCCAATGTTCTTTCTTCCATATTGGTGCATTGTGTTTGAGCGTATCAATAGCATATTGGCAAGCTTCAAACGCCTCACTCCGATGAGGACAACCCACTGCTACTAAAACGCTGATTTCCCCAACTCGCAAACGTCCAACGCGA # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.75, 7:-1.00, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGCGATGTGATCGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 68484-69463 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757586.1 Nostoc sp. KVJ20 contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 68484 37 100.0 33 ..................................... CTTTGGCGAAAATCGTATAACCCCATATTTCCC 68554 37 100.0 34 ..................................... GATATTCGGGGGATAGGTAACTCGGTTCCGCCAT 68625 37 100.0 35 ..................................... GTGGGTAGAATATTGAGTAATTCTGAGTGAGTTTA 68697 37 100.0 34 ..................................... TTTCTCGAATTGCTCTCAAAATTCTTTCTACAAT 68768 37 100.0 39 ..................................... GCAATGATTTTTTGACTTCTTTTGACAACAATGTTACTC 68844 37 100.0 34 ..................................... TTTAGTCCAACGCTCATCTTCAGCCAAAGCGCAG 68915 37 100.0 34 ..................................... GAAACTTCTCATCTTCAGAGAGAGAATCTAAATG 68986 37 100.0 36 ..................................... TATCAAATCTTTGAGGTTGATGACTTTTTTAGGCAT 69059 37 100.0 33 ..................................... GTAAGATACGCATCGGCTTGGTAGAAGGTGCTG 69129 37 100.0 35 ..................................... AGTAACATCACTATATATAGGTATGTCTATAAATT 69201 37 100.0 40 ..................................... ACAAAGAATTGCAAGCGCTTTTAAAAGAAGTGAGAGAGAA 69278 37 100.0 39 ..................................... GAGAGCAGTTAATCTCCTCCCGAATTTGCTGAATGCGCC 69354 37 100.0 33 ..................................... TCTGTGTAAAGGCAGGGAAGAAACACTTCAGGA 69424 37 86.5 0 ..........................AAA.A.....T | AA,G [69456,69461] ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.0 35 ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Left flank : CTGTGAATCTTGCACTAGCGCGTGGTCCAAAACCCGTTAAACCTCCAGCCGCTAAAGTTAAAACAGAAGAACTTGAAACCGAATCAGAATCAGAATCTACCTCTGAGGAGTCTCAAGACTAACATTAGAAGTGCCGCGTGTGATGTGGGAGGCTATAAAGACTGTGATTTCTGGCTCTGAAGGCAGCGATCGCGCCCCCCATCACCATTAAGTTATTGTGTAGCTTCTCACAGAGTTTTTTTATCTCAATGCGCGGAAGGGTAGGTGTACAAATTTCACATTCCCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCCCGCTAATCTTCCATTGTCATCCGCGCAACTTCTGAAATGCTTACAAAAAGTGGGTTTCAGCTTTCAACTTTTCCCGACACTCTTTCCAAAGAAATTCTCTAATGCTATGATTGCTCTAGATTCGCGCAACCGTACCTTGAAAACTAAATACAGCTTGGCTTTCCGGCTTCTGCC # Right flank : TTCTTAAACAGGTAGCGAGTGCTGAGTCATGAGTGCTGAGTGGAGAATCTCACTTTTTCTACTCATCACTGGCTCAACGCCCCGCTACAGCTAACGGAACTCGGAACTATTTTGCCCAATGCCCCATGCCCCATGCCCAATGCCCTAAATCCTTGAAGCTGTTTGTTTAGCACTCGCAGGGACAACAGGCAATGGTTGAGCGGCTTTCAATACCGCATCCAGCAACCCTGGAAACAGCATCTCTAAATCTTCACGCCGCAGGATGTTAATGTGCTGTGTCCCTTCTTTCCGTGTAAAGACCATCCCCGACTCCCGCAAAATCTTGAAGTGATTAGACATGGTAGACTTAGCGATCGCAAAATCAAACCTCGCACAGCATTGTTCTCCCTCAGTCGCCAACAACCGCACAATCTCTAGCCGCACCGGATCGCCCAATGCATACAACACGCCCGGTAAAGAAATATTTTTTCTATCTGGATGATAAAGGAATCTCATAGTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 37062-37245 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757604.1 Nostoc sp. KVJ20 contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 37062 36 100.0 39 .................................... ACAAATAATATCAAACCTATAAAAATTTTCCTCCACCCT 37137 36 100.0 37 .................................... CAACCTTAAGAAAGATTAAATGATAATTAAAAGGAAC 37210 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 38 CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CAGTCTCATGGTTAAATGTCCCTAAGTTATTCAGTGAATGGATGCCGAACTAATTAAAAGCTTCCCAAGCTTACATGAGTCTTTTATGAAACTTCTATGAGAAAATTCTCATCATTCTTTTGTCAAAATTGAAGAATAATTCTGACTTCTGCATACTTCTTCAATTCCGATTGCGTAATGGCAGTATAAGTCAATTCTGGGTGTGGAAATGCGATCGCCCAAATTCCCTAGTTTTTTGTAACAATCGTGTAATATATTTGACAAAAAAGGCGTAAAAGTTTTAGTTTGGAAGCAGCGTATGTCGTTCATCGACACCACTCGCCCGAATCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGCAAGGCTTTCAAGCTGTGAAATGCATCGGTTATTGACAATTATTCGGGAGTTATTGACACTAAAAAAAGTGGTGTCGATTAGGGGGTCTGAAACCCGCTTCTGACAAGGCTTCCAGAAGTGAACT # Right flank : GTTTAATATTTTTGTTGCCAGTAAAAAACGAAACCACTTTACGATCGCATCGCCCCTCACGGGGATGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 43912-43143 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757612.1 Nostoc sp. KVJ20 contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 43911 37 100.0 31 ..................................... ATTAAAAGTAAACTCATAACCCTTAAAAGAA 43843 37 100.0 36 ..................................... GTTAGGAGCGATCGCCTATCATGAACAATAAATTAA 43770 37 100.0 36 ..................................... GTTCCCTGGTAAAATAAGTAACTCGTAGCTGTCCCA 43697 37 100.0 38 ..................................... TTTGCATCTGGTGCACATTCATCTTTACTGAATATTTT 43622 37 100.0 37 ..................................... TAATAAATCCTCTTCGATAATAAAACAGTTGCAGCGC 43548 37 100.0 34 ..................................... AACTATCTCTTTTATTTCATCCTTGTAAGCAAAA 43477 37 100.0 36 ..................................... GTAAAGCAGTTTGATACCCAACAGCCTCAACACTAT 43404 37 100.0 40 ..................................... AATCCACAATGGTATGACCTTTTCAGACATACCAGCAGAG 43327 37 100.0 36 ..................................... ACCGCTACGGTTCCAAATTGGTGAGAATAACTGAAG 43254 37 100.0 38 ..................................... AAGATATTATCTGGATGATGGAATCCTTGGCGCAGACA 43179 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 100.0 36 ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCGATTCTCAAGTCTTATGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCCCACTCAGTATGCTAAACTGCGATCGCGTTTAGCCAAATTGATTAAACCCGACACTGACAGCGTGCGCTTTTATTTTCTCTGCGGCTGTTGTCAGCGAAAAGTCGAACGTATTGGTGGAGAACAGCCACGGGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTAGCTAGATTTCTGTATCTCAAATGCGCGGAAGGGTAGGTGTAAAAATTTCACAGCCATAAAAAAGTGCTTCTATCCCAACTCCAGTAAGGCTTTCAACCCATTATTCGCCTAATCCTCATCCGCGCAATCTCTGAAATGCTTATCAAAAAACGATTTCAGCCTTTAAATTTTCCTGACACTCTTCCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGGGTTTCAGGCTCCCGCC # Right flank : AGAAACTCAAGATCAAAGATTGAAGCACCTGAAATGCCCAATGTGTAGATTGAACATCATCTAATTGATTTACTGAAGTCACTTGTCCTTGTAGCATTGCGCCCGATTCTTGGGGAATACTTTCAGGAATTAGCTGGGTAATTGAAGTTGGAGTAAGAGGAGAAAGTTTTTCCTCAACAGTCTCGGCTAAGGTAGGAGTTGCATGATTTAGGATGAGGAAGCTCAAAAGACTCAAACAACCCATTATATGAAAATCTGCAAACCAATAATTTTGCATACTTCAGCAGTAGGACAAGCTCGACATCAGTGGCAGTCGTCAGATCGAAGGTATGATGTGCAAACGTCCTCGCCTCAAAACTGAGAGTAATAAATTCGTACTCGGTGTTCCAATAAGCCGAATTGAGGATATCAGCTGGCACAACCGTCACATCGCCATATCCAAATTGCCGCTTTTGAAAGCGATGCTCGATCATCTCTTCAACCATTGGCGGCGATGGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 235-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757611.1 Nostoc sp. KVJ20 contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 234 34 58.8 39 .CCTT.C..TGT.TC.TTAA.............. CCTGCGGCTCTAACTTTTTCAGCCACAGTTAAACCTGCA 161 34 100.0 40 .................................. TATTGGTGGTGAAACGCTGTTAAAAGCGCTTTCTCTCAAG 87 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ======================================== ================== 3 34 86.3 40 TTTCCATCCCCGTGAGGGGTAAGAGATTTAAAAC # Left flank : CTGGCGCTAATCAAGGCGGGCAACAAGTGCCACCAGATAAGACATTGTTCCAACCGCGACCTGGGGCTAATCAAAGCGGACAACGAGTACCACCAGATAAGACATTGTTTCAACCGCGACCTGGGGCTAATCAAAGCGGACAACGAGTACCACCAGATAAGACATTGTTTCAACCGCGACCTGGGGCTAATCAAAGTGGGCAACAAGTGCCGCGAGATGTGACTTTATATCAACCGCGACCAGCATCTAGTCAAGGTAGACAACCAGTGCCAACGGATGACACTATTTACCAACCAAGGCTAAGTGGGCAGCTAGCTACAAGAATCACTCCCAATTTTTTGCGAATCCTGGGAGTGGTCTTTGCCATTGGGCTGACTCTGGCATTAGTAACCTTTATATATACTCAATCGCAATCTGGTAAAGAGCCAAATAACCAGCAAGGTTTACCTAATAGCGATCAGCGCATTCAGAACTAATCAGCTAATCAGTTATATCAACAC # Right flank : CACAATAAGCGAATACATATCGATTCGTACAACAGTTTAATGGGTAGGGCAGGG # Questionable array : NO Score: 4.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATCCCCGTGAGGGGTAAGAGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 168-785 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757613.1 Nostoc sp. KVJ20 contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 168 36 100.0 37 .................................... TGGAGATATTCTTTGTCAGTAAATGCGTACGCGCTTT 241 36 100.0 35 .................................... AACTGGTCGGACAAGGTCTCCCTTGATTTGCTTGA 312 36 100.0 36 .................................... TCTTTTACCATCGCCACAAACATGTCGTGATGGTAA 384 36 100.0 39 .................................... GAAAGGATGGTGTTGCGAAGGCGCACACCGAAACCCTGC 459 36 100.0 38 .................................... GTTTTTGCCTCGGTTTCCTTTGGCAAATTTCACCTTGT 533 36 100.0 37 .................................... GTCTAATGCGTCTGTAACATCGCCAGTGGAATTTTGA 606 36 100.0 35 .................................... AAGTTATTTGGTATTGCAACGGGGCATAATGTTGC 677 36 94.4 37 ....C.....G......................... GGGAATGATTGGCGGACGGTAAACACTCCATTCAAAT 750 36 77.8 0 ....C.....G..CTA.....C........AA.... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 96.9 37 CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : ATTCTGAACTCGATGATGAACTGAGTCTTTGGTAGCTTTAGGATTTGCTAAAGCCGGATGCTTGGTTAACTTGCTTGTCCGGTTTGTCGGGGGGAAAGGGATAGAAATATCCCTGCCCTACCCATTAAACTGAGGAAGGCTTAAACTGCCAATGCCATGGCAGTTTGC # Right flank : CAAAAACTCACCACGCGATCGCACCAACGTAGCCATCAACCACCTAAAACGCCAGTGGATAAGCTAAGGTAAAATTTATGGCGATGGTAATGTAAGATGATTATCTGGATGATGTCTGGTTAATATCCATAACCAAAACAAAATCTAAATTACTAAAGCTGAGATTTGGGAAACTCCGGTGAAATTCCGGGACTGTGCCGCAGCTGTGATGGGATCACCCAAGTCAGAATGCCAACTCTCAGGATGTCGTCAAGACACACTCACCGTCTACTCCCTGCGTTGCACGGGGAAGGAGTTCTAAATTTGCTTTCTGGATTTGCCACTTGTCCTGGCCTGTTTTATCCTACTCCCGCCGCAGATGGTATATTATCTCGCATTAGAATACCGGGTGGAATTATTAGTAGTCAGCAGTGCCGTGCGATCGCAGATATAGCAGAACAACACGGTGGCGGCTATATAGATGTGACTAATCGAGCTAATCTGCAAGTCCGTGAAATCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 180-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV757624.1 Nostoc sp. KVJ20 contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 179 26 100.0 46 .......................... GGGATTGAAACTTTTAATGTGCATATTAGCGCCTCCTTTGGTTCTC 107 26 100.0 47 .......................... GGGATTGAAACTATTTTGGCTTTGACTATCCCTATATTGCCGGGAAT 34 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================================== ================== 3 26 100.0 47 ATTGCAATTAATCAAAATCCCTATTA # Left flank : TCCCAATATGCCAGGAGCAGTACCTTGGACAGCAACTCAGGCACTTAATAATAGTACATTACCTTATGTTGTCCAGTTGGCAAATTTGGGAATTATGGCACTGGAAGTTAACCCAGCATTAGCTAAGGGTGTGAACGTGCGGAATCATCATTTAGTGCATCCGGCTGTGCAAGAGGTATTCCCTGATTTGGTAAATTAAGGTTTGCAAGTGCTAGGCGATCGCTTATTTTTATAGTGGTAGCGATCGCTGGTTAGACTAATTTTCTTGCTTAATGCGCGGATGGGTAGGTGTACAAAATGAGATGGGGCAAAAAAACCTGTATGCTCCATCTATACAAGGCTTTGAGGGCAATGGTACTTTTAAACCATCCGCGCACCTTATGGGGACTGGTTTTCAGCGATTTGTATCTTGTGTTATGACTATTCCCTGTGCTATGATTCACTCATTCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGGCTTTTGGACGCCAGCG # Right flank : AACCCAAGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //