Array 1 1164-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESB01000250.1 Escherichia coli strain KCJK8925 NODE_251_length_1293_cov_4.301029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1163 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1102 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1041 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 980 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 919 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 858 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 797 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 736 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 675 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 614 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 553 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 492 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 431 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 370 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 309 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 248 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 187 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 126 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 65 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8669-9247 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESB01000007.1 Escherichia coli strain KCJK8925 NODE_7_length_71876_cov_6.576301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8669 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8730 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8791 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 8852 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 8913 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 8974 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9036 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9097 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9158 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //