Array 1 393153-386409 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDF01000001.1 Shewanella algae strain CHL scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 393152 29 100.0 32 ............................. CCTCAAACGTAGGTTTACGTTATATGGTTATA 393091 29 100.0 32 ............................. AAACGTCGGGTCTTAGTTCTCATTATTAAAAG 393030 29 100.0 32 ............................. CAAACAGAGGCCTACGATTTTGGCCGCGAAGC 392969 29 100.0 32 ............................. AACCCAGCGCTTAACTTGCTGGCATACTCAAC 392908 29 96.6 32 ............................T TCTAGACATGGTTATCTTGCGCGAGCAGTACG 392847 29 100.0 32 ............................. TCTTTGTGAAATGGGATAGCAATCCGTAGCAA 392786 29 100.0 32 ............................. CTCGATGTGAGGCCAGTAATTAGCCCCTCCTG 392725 29 100.0 32 ............................. ATGATTGGATTACTCAAAGAGCTAAAGGCTCA 392664 29 100.0 32 ............................. AGGTTTGCTTTGCTGGCGACAGGCTAAAGTCA 392603 29 100.0 32 ............................. TTTGAGCCGCTAAAATTGGCCACCAGCCCGAT 392542 29 100.0 32 ............................. TCGTGCAAATCTCAATTGGCGGGGGTGTAAGA 392481 29 100.0 32 ............................. CGTTTAATCGCCTGGCCAAGCAGCTGGAGCAT 392420 29 96.6 32 ............................A TGATCGCCCGCGACCAGACTGCCAAACTCAAT 392359 29 100.0 32 ............................. GTGCTCGCCTGGCCGCCTTTTTTGTCGATATC 392298 29 100.0 32 ............................. ATGACAGCTTTGAAACCTGACTGACACCGACC 392237 29 100.0 32 ............................. CAGAGACTTTAGCGCATCCATTGCGCGAGTAA 392176 29 100.0 34 ............................. CAGATACATGTACTCTTTCATCAACTCGTCGAAC 392113 29 100.0 32 ............................. CCAAGATTGAGGCAGTGAAGGAGGCCATAATA 392052 29 100.0 32 ............................. ACCTAGAGGTTCCTGCCGGTGAATATCGAAAA 391991 29 100.0 32 ............................. TCGAGTGACCTCATCGGGATCCGCCCGGTGCT 391930 29 100.0 32 ............................. GTTGTTCTGGACGGCGAGCAATGGTCTATCGT 391869 29 100.0 32 ............................. GACTGATATTTCGTAACTCAGGCATTGATGCC 391808 29 100.0 32 ............................. CACTCGCCGACGCCGCATCAAATATCTGATAC 391747 29 100.0 32 ............................. CTTTTCCTCTGGACTCTCAGCAACTCCTTCTG 391686 29 100.0 32 ............................. CATATTTTCATCTACCCCTGTCTTGTATGCTG 391625 29 100.0 32 ............................. CTTGAAGCGTTGACAGCCAAAGTAACAGGAGA 391564 29 100.0 32 ............................. CGACTGGCTCAATGAAGTTTGACGACCTGTTC 391503 29 100.0 32 ............................. CCCACTTCGGTGGGCTTTGTTTTGAGCAATTA 391442 29 100.0 33 ............................. CACTGGGCTGGTGTGCTTTTTAACGTAATCAAC 391380 29 100.0 32 ............................. CGCAGGGCAACTCCGCAGGCAACAGCAATCAG 391319 29 100.0 32 ............................. TTTTATTGCAATATCTAATTTCATTACCTTCC 391258 29 100.0 32 ............................. ACGGCGCGAATCGCCTGCTTAAAGGTGGTGCA 391197 29 100.0 32 ............................. GGCGATCTGCAAACCGCACAACTGGCCGCTGG 391136 29 100.0 32 ............................. GAGTGCAAAAGTCCGACACGGGACAGAAAACA 391075 29 100.0 32 ............................. TCAACTGACTCAGCATAAGCCAAATCATCTCT 391014 29 100.0 32 ............................. TCAACTGACTCAGCATAAGCCAAATCATCTCT 390953 29 100.0 32 ............................. ACCAGGGCGAAATCAAGGGCAACCGCTACAAC 390892 29 100.0 32 ............................. TCAGAGCCAATGAGCTTTACCCAACACCGGAT 390831 29 100.0 32 ............................. CCGTTATGTCTGCATTGCTTAACATTGAGAGC 390770 29 100.0 32 ............................. TCGGGGAAACGTCCATCAACAGGTGTGAAACC 390709 29 100.0 32 ............................. GACCGTACACTGGTAAAACACCAGGTTTTGCA 390648 29 100.0 32 ............................. CCACAGTTGGTTCAGTTGACAATTTATCAGAA 390587 29 100.0 32 ............................. TGGACCGGAACGTGGCGCAGGGTCGCACCCGT 390526 29 100.0 32 ............................. GTCTGATGGACGTCATGGTCGAGGGGCCGACG 390465 29 100.0 32 ............................. TCATACATGAGCCGCACTATCCGGGGCGCAGT 390404 29 100.0 32 ............................. ATATATAAATCAATCACTTACGTTACACCAAT 390343 29 100.0 32 ............................. CGAACCGGCCGGCGGATTCTTGACGAGTCGTT 390282 29 100.0 33 ............................. CCCGTATAATCGCGATGGCGGCCGAGACGCCCC 390220 29 100.0 32 ............................. GTCGTGTCGTCGCTGGCATGGGGGGTAAATTC 390159 29 100.0 32 ............................. TAATGGGAGTAAGGGGAAAAGAGGGGGGGATA 390098 29 100.0 32 ............................. TGAGGCGAGTAAAACTGCATCATCTGTTGCAA 390037 29 100.0 32 ............................. CGAAAGCCAAGGCAGCGGCCGAAATGGGTGAT 389976 29 100.0 32 ............................. AAATGGACGCGGCGAACCAGTTTGATGAGATC 389915 29 100.0 32 ............................. CGACGCGTAATCGTTCAGCAACGCATAATTCC 389854 29 100.0 32 ............................. CTGGATTGTGATCGCGACCTTGCATATCTTGA 389793 29 100.0 32 ............................. CGAAATTGCTCGGCATGGACAAGCAACTGGTC 389732 29 100.0 32 ............................. AAATCCGACAGGCGAAGTTAAACGGTGAAAAT 389671 29 100.0 32 ............................. AAATCGTCGCGGATATGAACAGTCTGTTGATC 389610 29 100.0 32 ............................. TCAGGGCGAGAACTTAAGCTTTGAGTGCTTGA 389549 29 100.0 32 ............................. AAAAGAACCATATCGTTAATTGGTTTTCGAAG 389488 29 100.0 32 ............................. CGAATTATCAGACTGGAGACAATCATGCTCAT 389427 29 96.6 32 ............................A GCCACACGGTGGTGATGATGAGCGTAATGGAC 389366 29 100.0 32 ............................. CTTGTGATACCTGTAATGTTTCATCAATTGGT 389305 29 100.0 32 ............................. GCGTTGCTGACACGATCAGTGAGAGTCTGTTA 389244 29 100.0 32 ............................. AACGGGCCTCCAGGCATCAACTAACCGTGCAG 389183 29 100.0 32 ............................. TGAAATGATAGCAATATGCTTGCCTGGTTAGA 389122 29 100.0 32 ............................. GAGATAAACAGTATTCGATAACAGGCAAAGAG 389061 29 100.0 32 ............................. ACTCATATATTCAGTGACACTTTTCGGGGTGG 389000 29 100.0 32 ............................. ACACCACCCAACGCACCGAGTACAATACGGAA 388939 29 100.0 32 ............................. CGTATCAAATCAAACCAGGTAACAATCCAGCC 388878 29 100.0 32 ............................. CAGATTGGTTCAGTCAGTTTAGCGCGCCTGTT 388817 29 100.0 32 ............................. GCCGGTGGTGTAGAGTTCCGCTATCCATTCAG 388756 29 100.0 32 ............................. CGTATACAGTGGGCTATGAAATCCTGACTAAG 388695 29 100.0 32 ............................. TTTCCTACTTGTCCTCTCGGTTATTTCAAGTG 388634 29 100.0 33 ............................. CGCTATACCTCCGGAGACTCAGTATTTTCTGGC 388572 29 96.6 32 ..........T.................. TGCTGCTTCTCCGGCTTTTATTCATCCAAAAT 388511 29 100.0 32 ............................. TCAAAGGTTTACGGTGTCAAGTAACCTGTGAT 388450 29 100.0 32 ............................. CCCCTGGTAGGATTAAAGCGAGGGTCTTGTGA 388389 29 100.0 32 ............................. CCTTTACCAACACCATCCTTGGCGGTAAACAG 388328 29 100.0 32 ............................. CGAGAGATAGAAACCATCAGCGCAGCCAAGGC 388267 29 100.0 32 ............................. GATTCGAGCATATCAAGTCAAATGACAGGTAC 388206 29 100.0 32 ............................. CCGTATTTTCTCGATGCCTCCATCACTGTTCC 388145 29 100.0 32 ............................. GCCTCTCGAATTAACCCTCTCAGATATTCATC 388084 29 100.0 32 ............................. TTAAATGCCATCATTAACGCTATGGCATTTTT 388023 29 100.0 32 ............................. TCGGTGATGGATGCCATAACCAATATTGCAGA 387962 29 100.0 32 ............................. TAGACGGATGGGCGGATAGTCGCGATAGTATC 387901 29 100.0 32 ............................. CTGATGGTCATTCGTCACAAATCTGCTGAGTA 387840 29 100.0 32 ............................. ACCTTGAAATGCTACGCCAGCGGATTGAAATA 387779 29 100.0 32 ............................. CAATTGCAAATTGGTTAGCGTCCTGAATCTCT 387718 29 100.0 32 ............................. AAAGTTCAATAGGTTTGGCGTGAGCATTGATG 387657 29 100.0 32 ............................. GGAATGGGCCGGGGCAATGCAATATTGGTTTG 387596 29 100.0 32 ............................. CTGCATTGGTCTAGCGTAATCCTGGGCAAAGG 387535 29 100.0 32 ............................. CGATCACTGTGGTGATGGATGGTGCCCGTAAA 387474 29 100.0 32 ............................. GTTTACGTTTTAGGTAGCACGTTGATTGAATG 387413 29 96.6 32 .A........................... CCGCTATCCACCATGCCAGCGCCCTGGCTGAA 387352 29 96.6 32 .A........................... CCATGGTGGACTACAACGCCAAGCTAGGCGAT 387291 29 96.6 32 .A........................... CTGCGCCTCACCAACTCGGCCGACAATGTGAT 387230 29 96.6 32 .A........................... ATTCATATGTTCCACCTAATAAATGGCCTGCA 387169 29 96.6 32 .A........................... CTCATTGGCTTTTCGGGTGAGTGCAGACACTC 387108 29 96.6 32 .A........................... TTTTTCGATACCGTGGTAGGTAACATGCAGCT 387047 29 96.6 32 .A........................... CGCCTCAGCTCTATCCATGAACACGCCATACT 386986 29 93.1 32 .A............T.............. TTTATCCACATCGACATTGACGACTCGCTGCC 386925 29 89.7 32 .A............T...........T.. GAATAGCGAACCATTTGAGGATGTTGTCGCAA 386864 29 93.1 32 .A............T.............. GTTAGATTGTTGAATGATGGTGGTTATATTGG 386803 29 93.1 32 .A............T.............. TCGGCCAGCTCTCTCGCTTCATCTGTTTGGAA 386742 29 93.1 32 .A............T.............. CGTTGACAGAATAAATGAGTTTCGTGGTTATG 386681 29 96.6 32 .A........................... ACGGAGAGTAACAACGTGGAATTTGATTACGA 386620 29 100.0 32 ............................. TATTACGGCCGTAACACTGCTGTAGGTGTGCT 386559 29 100.0 32 ............................. TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 386498 29 93.1 32 .A.......A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 386437 29 93.1 0 ..........................GT. | ========== ====== ====== ====== ============================= ================================== ================== 111 29 99.2 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGCGGGCGCCACTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGGATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //