Array 1 29-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWW01000054.1 Photorhabdus luminescens strain H5 NODE_54_LENGTH_24503_COV_7.91155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29 28 100.0 32 ............................ GCTGGTCGTCGCAAGTTGCGCATCAAAGCCAC 89 28 100.0 32 ............................ TAGCTTCTGTCGCTTCACGATGTGCCGTATCA 149 28 100.0 32 ............................ AAACTGCCGAACAGGCAGCAAACACCCTCAAT 209 28 100.0 32 ............................ AAAACACGAGGAACGAATAAAGAAGATTTAAT 269 28 100.0 32 ............................ AATGTCCTCTAAAGCCTTTAACGCAATCCGGA 329 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATACTGACATACCGGCAGCTTGACCACCG # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGTTTTTGTGCATATTCTTCACTGTTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACTATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGACGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18680-17872 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWW01000080.1 Photorhabdus luminescens strain H5 NODE_80_LENGTH_18854_COV_8.287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18679 28 100.0 32 ............................ CGCAGCATGGACAGCCCAAACGACCAATATCA 18619 28 100.0 32 ............................ TACTGCCAAACATCCGCTTAGCATACTCTGGA 18559 28 100.0 32 ............................ TTTGATAGCCAATATTTTCTCGGCATCAATAT 18499 28 100.0 32 ............................ TATCGTCGAAAAGCGTTACAGATAATGGGTAC 18439 28 100.0 32 ............................ TAATGAAATAATTACTAAATCTGGGGGTTTAA 18379 28 100.0 32 ............................ CGTTCCTCGTGTTGCTGCCGCTTGCCACACAT 18319 28 100.0 33 ............................ GTATGAAAAGTTGTTCTTTTCTACATGACGGAA 18258 28 100.0 32 ............................ AATACAGCCTGCATAAATACCATCGCCATCAG 18198 28 96.4 32 ...T........................ TTACAATAAAGCACGTATAACCGCTACACACT 18138 28 100.0 32 ............................ TATAATCTGACGGCGGACCAGGTGATGAAACT 18078 28 100.0 32 ............................ GCATTGGCTCTGAAAACCTGTCAAAACTTGAC 18018 28 100.0 32 ............................ TGATGCAACTGAGACAGCTGGTAAACATCCAG 17958 28 100.0 32 ............................ TCGTTAATCGGGGAGCGTAGCCCAGTTGTTGG 17898 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAGTATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAAC # Right flank : CACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15093-15240 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWW01000088.1 Photorhabdus luminescens strain H5 NODE_88_LENGTH_16502_COV_8.33378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15093 28 100.0 32 ............................ CATGTAGGCATATCATTTACAAACGGAACAAC 15153 28 100.0 32 ............................ TTGCTTATTAGAATACGTTGCCGAGCTTGTTT 15213 28 82.1 0 ...........T.........CAGA... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTACAGGTTAAAAGTAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAAGAGCAACGTACTCATTTACCATTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACATCAGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCGTCCCTTGGTTTTGATCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACAA # Right flank : AAAAAGAGTTTTGCTTTATTAATAGCAGAACTCTTTTTTCCTTAAAATTTTGTATTAATAATACTTATTGACGTGTGTATCTTAAGAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATATGGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTCTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACGCCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCTAGTGCTGTTATGACAACTCCTGGTAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGCGGTTTCTAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGTTCGGATATTTTCTGACTTAATGCATTTTCGA # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5265-5531 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWW01000107.1 Photorhabdus luminescens strain H5 NODE_107_LENGTH_12526_COV_7.07424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5265 28 100.0 32 ............................ TCCGAGCGCTGAAGCGCAAACAGAGCTGAATA 5325 28 100.0 32 ............................ AGATAATTGCACTCTGCAAGACGCACGAAATC 5385 28 100.0 32 ............................ GCAGAGATATCTCATGATGACTTCTTGTTGAT 5445 28 100.0 32 ............................ ATGTAGAGGTGATCCGAAGACCGTCACCAGCC 5505 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAACAGTTATTGGTGAACGGTTATCAATGTTTTATAGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCCGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAAATGGAAGATTTCTTGAAACGTAGTCGCTAGCTAAGAAAATTGCGTTAATGGTAACTTAAAAACTTGTGCATTCCCGAACCTAATTTTTAACCCTTTTTTAGCAGTCAATCGTAACTTATTGATTCTGAATTAAATGTTATCTCTTTTGTAAAAAAGGGTCTTTTGGGTTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAAC # Right flank : TTCTTAAAGTTCTAGGTGTGGTTTAGAGTTATAGAAGTAAGGAATTTCTATTGAGTGATAAGACTGGAAATATTGGCCTCATATTGAGGTTGGTAAATACTCTACCTCAAGGGGGAGGTAGAGTATAAATGGGTTTGAGTTTTAATTGAGGCTTTTCACGTTTTACATGAAGCGACGTAAGCTTTATCAGATTAAATTTCCCTATAATCCAATTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTCTGTTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTCTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTGTAGCCCAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTTAAGTTCAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //