Array 1 1406747-1404533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594049.1 Streptococcus gordonii strain NCTC10231 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1406746 36 100.0 30 .................................... GGGTTAGGCTGCTTGTCCTCGGCTTGGAAT 1406680 36 100.0 29 .................................... CTGTCACAACGGCATTTGCTACTTTGCCA 1406615 36 100.0 30 .................................... AACACCGATCAATCTACCTTGCATCTGCAT 1406549 36 100.0 30 .................................... GTATTTTAGCGGATGCAAACAAAGTAGATG 1406483 36 100.0 30 .................................... GGTCTTTCTAGGATAGGGAGAACAGCTCTA 1406417 36 100.0 30 .................................... TAAGATTCCTGAGAAGGTGGCGTTTGTCTA 1406351 36 100.0 30 .................................... CGATTCCTCGAATAGTGTCATCTGATACTT 1406285 36 100.0 30 .................................... CGCACATCACTAACGAGACATTGATGGACA 1406219 36 100.0 30 .................................... TCTACAAGTTACCAGGTATCAAATTTACTG 1406153 36 100.0 30 .................................... AAGGTGAGTTACCTTCTAATTTTGATTCGG 1406087 36 100.0 30 .................................... CGGCTTACTAAACCACTTGCTAGCGCCTTT 1406021 36 100.0 30 .................................... CAATCCCTCTTGTCGTTCTTCCTCGCTTCG 1405955 36 100.0 30 .................................... CAAGAAATCTTGAAACGCTATCCAACCGCT 1405889 36 100.0 30 .................................... CGGCTTACTAAACCACTTGCTAGCGCCTTT 1405823 36 100.0 30 .................................... TCAAACGAGACAATCTGAGCGTAGTGGATG 1405757 36 100.0 30 .................................... TCAAACGATTTAACAAGCTGAATTCTGAAG 1405691 36 100.0 30 .................................... TCGCTTGTCTGCGTAGTCTCTGCCATGCTC 1405625 36 100.0 30 .................................... CTTGTGTTTGTTTTACATTCTTTACATTTC 1405559 36 100.0 30 .................................... CCAAGCGAGGTCTGAGAATAGATGCGAACC 1405493 36 100.0 30 .................................... GCTGTATGCGATCATATTCATCCGATGATA 1405427 36 100.0 31 .................................... CTTTGGAATAGACTGTCCGTTAACGTCATCC 1405360 36 100.0 30 .................................... CTTTACGAACGTTAAGTCCAGCAACTTTAA 1405294 36 100.0 30 .................................... CTCTGTATCCTGTTCTTTCGTTGTTCAAAA 1405228 36 100.0 30 .................................... TTTTATCCTTTGATGTCAAAGTGTGCCAAT 1405162 36 100.0 30 .................................... TTGCAAAGTGACGGCCTGAAACCATGTCAC 1405096 36 100.0 30 .................................... ACGAAAAGCGCCTTGCATTTGAACAGAATG 1405030 36 100.0 31 .................................... CTTTGGAATAGACTGTCCGTTAACGTCATCC 1404963 36 100.0 30 .................................... GTAGTATTTCTCTCTAGCATAATCACGATG 1404897 36 100.0 30 .................................... GATAAGGCATTTTTTGAGACGTGTCTGAGA 1404831 36 100.0 29 .................................... AAAGTTTAGTAGCATTAATTGACTATGGT 1404766 36 100.0 30 .................................... CGGGCGCTACACGGTCACTGCTGGAGCTTA 1404700 36 100.0 30 .................................... TAAAAAAAGTTGGTAAAAAATCCTTGGCCT 1404634 36 100.0 30 .................................... AAAAGAGCGCATCAAGTCGCTTAAAATGGA 1404568 36 80.6 0 .........................G.G..ATT.GG | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGACTATCTATCCTATAATGAGTTTGTGAACTGTTGCGAAAAAATGGAACTTCTTACCAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATCTTCATGTCACTAAAGAAGTATTAGAAGAAATCAATATTGTTTCCGATTATGTAGATCATTTTTATTCGTTAGAGTTTATGTATGAACGATTTATCAATCAATATCCAATAAATCAAATACCTAATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGAGCCTATTTATTTAGTTCGGACATTCTTCATATGAGCTTATCAATAGAGGATCAAGTAACATTAAAGATTTTAAATATCTTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCAGTCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGGAATTTAAGAATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGAATTTGAG # Right flank : TTATGCTATACGAATTTATTCAAAAAACAACCACCTATTTAGGTGGTTGTTTTCATTATCTATTACTGCTTACTAGAAGAACTTGAGCTACTTGAGCTGTCGCTGCTGGTTTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGTGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGATATCTACCTTGCCCAAGTCATTACCCTTGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGAGTATTGGCAGCATTACGAATGTCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTCTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //