Array 1 103344-102521 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHRF010000005.1 Streptococcus pyogenes strain K9679, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
    103343	    32	 100.0	    35	................................	AAGAGCTTATAAAGCAGCTCGAAAAATCCTTGAAC 	
    103276	    32	 100.0	    34	................................	TGCCACGAATGGTGCGAGTAGGTGGGATTTGAAT  	
    103210	    32	 100.0	    33	................................	TGGAAAATTAGCTGGTCTGACCAACCAAGAAAT   	
    103145	    32	 100.0	    33	................................	ATGAATTGGATAAGGTTTGCCTGATAGTATTAA   	
    103080	    32	 100.0	    35	................................	ATGAGGACACAAGTAAGTCCTGACAACAGCACTGC 	
    103013	    32	 100.0	    36	................................	GGTGCTAAAACAGTTGTTTGGAACGGACCTATGGGT	
    102945	    32	 100.0	    33	................................	AATGCTGTGGCAGGTTTTAATATCGATTACCAA   	
    102880	    32	 100.0	    34	................................	AAAAGATAGCTGATTATTTCGGGTTAATGAAATC  	
    102814	    32	 100.0	    33	................................	GAGATGATTATAACAAAAAAGTCCGACGGGAAT   	
    102749	    32	 100.0	    34	................................	TTAACACCGTCCGTTTTAGGATTTACAGGAGTCG  	
    102683	    32	 100.0	    33	................................	ACTTTGGTAATGCGACACCTAAAAATTATGCGG   	
    102618	    32	  96.9	    34	.....G..........................	TCCACAAAACAAAAAGACGTCCATGTGAACGCCT  	
    102552	    32	  93.8	     0	.....G.........................G	|                                   	
==========	======	======	======	================================	====================================	==================
        13	    32	  99.3	    34	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                    	       

# Left flank :   AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTAACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA
# Right flank :  ATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGCGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA

# Questionable array : NO	 Score: 9.22
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.70,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : NA
//