Array 1 108221-106132 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVS01000004.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2898 NODE_4_length_214867_cov_2.85365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 108220 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 108158 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 108096 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 108035 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 107974 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 107913 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 107852 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 107791 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 107730 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 107669 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 107608 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 107547 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 107485 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 107424 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 107362 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 107301 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 107240 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 107179 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 107118 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 107057 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 106955 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 106894 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 106832 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 106771 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 106710 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 106649 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 106588 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 106527 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 106466 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 106405 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 106344 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 106283 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 106222 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 106161 29 96.6 0 ............T................ | A [106134] ========== ====== ====== ====== ============================= ========================================================================= ================== 34 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126521-124480 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVS01000004.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2898 NODE_4_length_214867_cov_2.85365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126520 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 126459 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 126398 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 126337 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 126276 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 126215 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 126154 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 126093 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 126032 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 125971 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 125910 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 125849 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 125788 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 125727 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 125666 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 125605 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 125544 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 125483 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 125422 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 125361 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 125300 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 125239 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 125178 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 125117 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 125056 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 124995 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 124934 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 124873 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 124812 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 124751 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 124690 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 124629 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 124568 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 124507 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //