Array 1 519521-520209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYW01000001.1 Pseudomonas aeruginosa strain AUS083 IPC271_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 519521 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 519581 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 519641 28 100.0 32 ............................ TGGACGACCTGGGTGTCGTTGGTTGACGAGTG 519701 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 519761 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 519822 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 519882 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 519942 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 520002 28 96.4 32 .............T.............. TCGGCGAGGCGGTCGATCATGCGAATCAGCAA 520062 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 520122 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 520182 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38624-39971 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYW01000020.1 Pseudomonas aeruginosa strain AUS083 IPC271_20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38624 28 100.0 32 ............................ GATGGCATCAGACTGGCCGGCCAGCCGTCGCC 38684 28 100.0 32 ............................ TAACCACCCAGCCCGGTTCTCCGTGGCATCAC 38744 28 100.0 32 ............................ GGTAAGCCCGGCCGCGTTGCGCAGAAGCAGCA 38804 28 100.0 32 ............................ ATAATGCCGGCATACTTGGAGACCGTATTGGA 38864 28 100.0 32 ............................ TCGGCCCTGGCGTAGAAGTCGCGCGGCGTCTC 38924 28 96.4 32 .........................C.. AGCGCGCAGGGACCTGATCGACCCTCAGTCAA 38984 28 100.0 32 ............................ TTGACGACCGGTTGGCGCAGGAAGTCATCCCA 39044 28 100.0 32 ............................ TAGAGGCCGCCCGTATGCTGGTCGCGGACATT 39104 28 100.0 32 ............................ ACCAGCGCCATCAGGCGTGCGGGATGGTCGGC 39164 28 100.0 32 ............................ TGCAGCTTGTCCAGGATCTGCATCATCGGCAG 39224 28 100.0 32 ............................ AGATTGCCAAGCAAGCCCTGTCCGGATGAGCG 39284 28 100.0 32 ............................ CTGCCATGGGGATAAGCGATCACACCGTGCAG 39344 28 100.0 32 ............................ TGCACCGCGGCCTGATCGGTGCTGCTGATGTC 39404 28 100.0 32 ............................ TACTACAGCGCCCCGTTGAATTCCTCCGCCTC 39464 28 100.0 32 ............................ AGTTGCGCGGAACTGCTCCAAACAACGAGCCC 39524 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 39584 28 100.0 32 ............................ AAGGGAAAGTTCCTCTGCGGCGTCCTGGACAA 39644 28 100.0 32 ............................ GAATCGACCGACGAATACCGCGAGGGCGTCGA 39704 28 100.0 32 ............................ TTCTTCGGCTCGAACAGCGCAATCCAGACTCC 39764 28 100.0 32 ............................ AGTGCGCCATCGTTCGCCAGGAAAAGCTCGCA 39824 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 39884 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39944 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49367-48500 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYW01000020.1 Pseudomonas aeruginosa strain AUS083 IPC271_20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49366 28 100.0 32 ............................ GATTTCGAAGTGGACTGGCGCGGCTCCGACAT 49306 28 100.0 32 ............................ GGGAATGCGCAGTTCTCGCGGATTTCGCTGAT 49246 28 100.0 31 ............................ AGGTAGGAAATTGTCGCACGACTCCATCCAT 49187 28 100.0 32 ............................ TTGAACGCTTCGTTCATCTGTTCGCCGGACGT 49127 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 49067 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 49007 28 100.0 32 ............................ AGAATGGCCTCCAGCCCCAGCGAATGGCCTGG 48947 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 48887 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48827 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48767 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 48707 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 48647 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48587 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 48527 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //