Array 1 948509-950062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017728.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13 strain SGSC 2193 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948509 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 948570 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 948631 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 948692 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948753 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948814 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948875 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948936 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948997 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 949058 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 949119 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949180 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949241 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 949302 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 949363 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 949424 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 949485 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949547 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949608 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949669 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949730 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949791 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949852 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949913 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949974 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 950035 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 966195-967366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017728.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13 strain SGSC 2193 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 966195 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 966256 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966318 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966379 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966440 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966501 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966562 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966623 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966685 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 966746 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [966788] 966788 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 966849 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 966910 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 966971 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967032 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967093 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967154 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967215 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967276 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967337 29 96.6 0 A............................ | A [967363] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //