Array 1 177995-177101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZL010000002.1 Virgibacillus dakarensis strain Marseille-P3610 NODE_2_length_226914_cov_40.449761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 177994 36 100.0 30 .................................... CCCACAATGTTGTTTAATGCGCTCTGTTGT 177928 36 100.0 30 .................................... AAGGCTTTTTTATTTATCAGTTATCTATTT 177862 36 100.0 30 .................................... AAAAGTCTATGAATCTATGATTAAGCTTGC 177796 36 100.0 30 .................................... ATCTAGGTTGGTTTATGTATGCCGATCTGG 177730 36 100.0 30 .................................... GAAGGCAAAAGAAGAACTCTCACGCTGTTT 177664 36 100.0 30 .................................... AAATACTAGCTGTAAGATTAAAGGGATTAA 177598 36 100.0 30 .................................... AAAGAAGAAGCTGAGGAAATGGCTTGGGAA 177532 36 100.0 30 .................................... TACAGGTGAATTTATCGGATCGTTGCGGGA 177466 36 100.0 30 .................................... TACACTTTTATACAAAGCTGGATATGTAAA 177400 36 100.0 30 .................................... GATTCTTTTGAAGCTGTCCAATGGCAGGGC 177334 36 100.0 30 .................................... CCAGAAAAGAGATCGTTCAAAAAGAGGAAA 177268 36 100.0 30 .................................... GGTTTATACTATGCAAACGATAAGTTTTCC 177202 36 100.0 30 .................................... CTAAATTATTTTCTTTATTGTCTGTTGTTG 177136 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GCCATAATTCCCCTGTAAACCTTGATGTGGTATGAT # Left flank : TGTTGGCTGTTGAATAGCCAACTTTTCTTGGAACACTTCATTCATAAAATCGCGAAAAAGGCGATCCGTTTTTAGAATGGCATATAAGACGATTAATTTGCTGGTGTTTATGTCAGCCGTGACTGTTTTCTTTAATAGAAACGCATCTATTGTTTTAAGCCGTTTCAGTATGGTTGAGGCGATTTCTTTTTTGCGTGTTTCTGTTTTCACCTGGAAGATGTTCTGGTTGATGACTTGATCTCTGATATCGGCCTCGCTGAAACCTTGCGTGAGTAGTTCTGTGAGCTTGCGAGTCTCGCTGTATAAAAATGGTTTGGATTTTATGGTTGAACGGTATGGTTGTTGGTTCAATTGACTCCATTCCTTTTATGGTTGCTAGTGCTATTTTTATCATGGATTGGTGGGGAATAATAGAGGATCTCATCATCAGCAGGTAGTGTTTTATTATAATTTCAATTTGGTGGTATAATATTTTTATAGCACGAATTGCCCCGTTGACT # Right flank : ACATGGCTTAAAAACCCTTGATACTTCCCCATTTCAAGGGTTTTTCTTTTTTAAAAAAAGCCATAATTCTCGTATGAATTTCTCCTTTTCATTTTCTTTTTTTTATGAAATTATAAAAAAAAATACTTGCAAACAAAATTGCAAGTACTTTTTTAAAAGAAATCTATCTTATTTGCCCCTAAGTCTTCCTCGGGAGTAGTTGTCCCCAAAAGAATGTCCATATTTTCAAATTGTTTTTCTGTAATTTTCATAGCCCGAATTGCTCCGTTAACAGGAGGTATATTTTCTTTCAATCTTCGCATGTGTTTCCGTACCCCGTCTTCTCCATTACAAATTCTTGTGTATACCGAATACTGCAGCATTGTATACCCATCACGCAATAAAAATTTGCGGAATCTGGAATATGCTTTCCTTTCCCTTGGTATAACCACCGGCAGATCAAAAAAACTATAATTCTCATATATCTACTCATACGTGTGAACTGTGATATTCGTAAGTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAACCTTGATGTGGTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 14898-17897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZL010000040.1 Virgibacillus dakarensis strain Marseille-P3610 NODE_40_length_49515_cov_52.289544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14898 32 100.0 34 ................................ ATTTATCTTATTTAATTTATTTTACATATCCTGC 14964 32 100.0 36 ................................ ACGTTTTTTATTTTTTAAATATCGTGAATATCTCTT 15032 32 100.0 33 ................................ ATACCCCGGGTACTGGCGTTGTAAAGGAAGCGC 15097 32 100.0 35 ................................ TTTTCTAACAATCAAGCAAGGCCAACATCTAACAT 15164 32 100.0 33 ................................ TTTTCCAAAGATCGTTGCAGCCGCTGCTGCCTG 15229 32 100.0 33 ................................ TTTTTGTTAATGCTCCGGTTGCTTGCATGACGC 15294 32 100.0 33 ................................ TCCTTCAAGCCTTATTCCGGTCGCGCCGAACAT 15359 32 100.0 34 ................................ AAATAAAGATTTGGTAAAAGTTGTTGAAGACCTG 15425 32 100.0 33 ................................ ATCGAACGAAGTCGCTAAACGTCCTGTGAAAAA 15490 32 100.0 33 ................................ GTGAGGCGCAAAAAATAAAAGGCATTGCCAGGG 15555 32 100.0 36 ................................ TCAAGCACAGATGATAATCGGATACCTGGATGCAGA 15623 32 100.0 33 ................................ ATCAGTAATACTCCGCACCCGTTTGTCTAATTG 15688 32 100.0 33 ................................ TACAGGCTTCCCTTTTGCTTTCAATATCTTACC 15753 32 100.0 33 ................................ AAGTCTCTTTCCGTCTTTTTGAATAACAATTCT 15818 32 100.0 33 ................................ TTAACGATCTTATCTGGTAGATCCGTATCATAC 15883 32 100.0 36 ................................ TTTCTTGGGGGTACTTTTCGACCCCTGGGGTTGTGT 15951 32 100.0 34 ................................ CTTTTATAATCCGTACCTGGGCAACGCTCATCTC 16017 32 100.0 35 ................................ TTTTCAAGCTTTTGCATATCATCAGCACTAGCACC 16084 32 100.0 33 ................................ GACAACAGTACGGTAATCAGGCGTTCTATTTCC 16149 32 100.0 34 ................................ CCTTGGATCGACTTTCTTTTTCCTGTTTCCTTTT 16215 32 100.0 34 ................................ AATTCATTCTGTTCAAAACCTGTTATTTCAAATC 16281 32 100.0 34 ................................ CGACCACATCATAGCTCTGCTCTCCAAATTAATG 16347 32 100.0 34 ................................ ACGTACATTTAATTGGTCAACATCTAATCGGGAC 16413 32 100.0 34 ................................ CACTCATAACCGGAGCCGTGTAACCTTGGCTAAA 16479 32 100.0 33 ................................ AGATCCGGGTACTTTGCGATCACTTTGTAAAAG 16544 32 100.0 34 ................................ ACCCGTAAGCCTTTCTCCCTCTTCGGTGGCTTTA 16610 32 100.0 36 ................................ TGCCATCGTATACAGGTGGTGCATGGCGAACCCCGA 16678 32 100.0 35 ................................ CAGTTAGGCAATTTACATCAACCCCGCCTCCCACT 16745 32 100.0 33 ................................ CATCAATCGCGCTTTGGATGATCGCTTTACCAC 16810 32 100.0 33 ................................ AAGAATGGGACCGGCGTTTTTGTTAAGATATCC 16875 32 100.0 34 ................................ AATGTGACGGTATTCAGATGGTGGAAGGTGATCG 16941 32 100.0 36 ................................ CATTTAACTATGTTAGCAACGGAAACACCGGATGCA 17009 32 100.0 33 ................................ TGTTACTGCAGATGAAATTGACGAAAAAGCAAC 17074 32 100.0 34 ................................ CTCCTGGTACTTGGGAAGGTAGTTTTACCACAAA 17140 32 100.0 35 ................................ TAAGTACAACGGTGGATTAAATTTGGTATCTTTAA 17207 32 100.0 33 ................................ GGTTGTTGCATTCACTTGCGTCTAACTATCCGT 17272 32 100.0 34 ................................ ATAACGTTATGATAACCGTACTATATTACGTACA 17338 32 100.0 34 ................................ ATCATATGGTATATTAGACCTACTCACATGGAAT 17404 32 100.0 35 ................................ CCGCGATATACTAGATTGGTAGAGTCCGGCGCAAA 17471 32 100.0 35 ................................ AGAAGATGCAAGCCGGAACAGAAAGGAATATCAGT 17538 32 100.0 34 ................................ GTAAATCGAGTATTCGATAAAATCGGGCACAATG 17604 32 100.0 34 ................................ AGAGGATGAACTAAAAAAGCATAAAAAAGGTAAA 17670 32 100.0 34 ................................ AATGGACGAGGAGCCTGCCGAAGATGAAAATGAG 17736 32 100.0 33 ................................ TATAAAACGTGGGAATTGGGAACTAAAAGTTAG 17801 32 100.0 33 ................................ CTTGAAAAACACAACGACCGAATGAACAAAGAA 17866 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ==================================== ================== 46 32 99.9 34 TTCGCATCCTATATGGGTGCGTGGATTGAAAT # Left flank : CCATTCCTGTGGAAGTAGGTGAAACATGTTAATTGTGGTTACTTATGATGTGAGTACTTCAAGTTCTGGTGGACAAAAGCGCCTCCGCAAAGTAGCTAAACTTTGCCAAAGTTATGGTCAACGCGTACAAAATTCTGTGTTTGAATGCATTGTTAACAGTACGCAATATACTATTTTAAAAAAAGAACTTCTTGCTTTGATTGATGATAACCAGGATAGTATAAGACTTTATCGTTTAGGTGATAATCATCAATCAAAAGTTGAGCATTTTGGTATTAAAGATGCCTTAAATTTGGAAGGGCCGTTAGTTTTCTAATTAAACATTTTTATTTGGTGCTAACCTAATGCGAACATAAAATACTAACGAGGTTAGCACCTATTGATTTTTCAGGGGTTTAGCGAATCTAGATAGAATTTCTTTGAATTTTAAGAATTGAAATTTTGAGTTAGCACTTTTAAGGTTATAAAACCCTGTTGTCTATAGGCGCGTTATGTGCGCC # Right flank : TTCCCACTCATGGAACTCAAGCAACGTGTAAAGGTAATGAATCACGAATCAATTCAAGCTTATTAACCGTGGCATATGCCATAGCGATTAGATTGTCATTGGAACGGTATCCACGGACTTTTCTCTTGGCGGCTTGAACCAAGCTATTTATTCCTTCGAGCAAGCCATTGGTCATTTTGGTGATAAACCATCTTACAATGCTGCATTTATGCTTTTTTAATGACTTGGCAACTTGAATCATAGGCTCTAATTGAGAGCGGATTGCCCAGCTATACCATTCATCAAAGTACATTTCGGAAATGATGTAAGATTTGGACCACATGTTTTGAAGCGATATTTTCATACGGTACGCACGACCCGTTGCTAGGTCCATGTCCTTTAATTTGGCGAATTTACTTGCTTGTTTTTCGGTTAGGTTTTCTTCGTTTTTTAGCCAAAAGTAACGCGAATTCTTCAGTTCTGGTTGTGAAGCTTGTTCTTGTCTGCGGACCTGATCCAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //