Array 1 16564-15071 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVD01000018.1 Salmonella enterica isolate STY164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16563 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16502 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16441 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16380 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16319 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16258 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16197 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16136 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16075 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16014 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15953 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15892 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15831 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15770 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15709 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15648 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15586 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15525 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15464 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15403 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15342 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15281 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15220 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15159 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15098 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162669-160704 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVD01000008.1 Salmonella enterica isolate STY164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162668 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162607 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162546 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162485 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162424 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162363 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162302 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162240 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162179 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162118 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162057 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161996 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161935 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161874 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161813 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161752 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161691 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161630 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161569 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161508 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161447 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161385 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161282 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161221 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161160 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161099 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161038 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160977 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160916 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160855 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160794 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160733 29 96.6 0 A............................ | A [160706] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //