Array 1 51000-50665 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNQ01000146.1 Escherichia coli strain EEPERB140 NODE_1510_length_168562_cov_46.665607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 50999 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 50939 28 100.0 39 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGNNNNNNNNNN 50872 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 50812 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 50752 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 50692 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 6 28 100.0 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CNNNNNNNNNNTCTAAGCTGCCTGTACGGCAGTGAACGATGACATCGCGCTGCAGCGCGGAGAAATTCATTTCTAAGCTGCCTGTACGGCAGTGAACTATATGAACCGCGATGCAGCGATTCACCGACCTTTCTAAGCTGCCTGTACGGCAGTGAACAATATCAAAGCGTTCCCGCGCTTGCGGGTATCTTTCTAAGCTGCCTGTACGGCAGTGAACGATTATTGGAAGGTGGGCGACCGCCGCCAGTTTTTCTAAGCTGCCTGTACAGCAGTGAACCATCATTTCCGCGCCTAACGGATTTTTGTCAGTTTCTAAGCTGCCTGTACGGCAGTGAACGAGTTCGTATCCCACGTTTGCCGTTACAAGTTTTTCTAAGCTGCCTGTACGGCAGTGAACCATATGGCGATTTATGCAGGCAAAGGTATTCATTTCTAAGCTGCCTGTACGGCAGTGAACTGGCGAGTGCTCGACGCTCAATTTTTCGGAGTNNNNNNNNNNA # Right flank : ATCAACATGACACCCGATTGTATTCAGGANNNNNNNNNNGTTCACTGCCGTACAGGCAGCTTAGAAATTCCCTGCCGGTTCTCTGTATCCATGAATATCGTTCACTGCCGTACAGGCAGCTTAGAAACAGATATCGTGCCGCACCGATCGTGACGAGCAGTTCACTGCCGTACAGGCAGCTTAGAAAATACCGCCATCAAGTGTAATGCCCTGATCCATGTTCACTGCCGTACAGGCAGCTTAGAAAACTGCCCCGACTGCGGGCCGGTGTGCGGCNNNNNNNNNNTTCTAAGCTGCCTGTACGGCAGTGAACGAGGAAAAACGTGGCAAAGGATACTTTCATCATTTCTAAGCTGCCTGTACGGCAGTGAACTCAAATACTACACGTTTAGCCCGTTGTTAATAAAGCAAAACCATCTCAATCTCCTGCTGCCACCCTTTTTTATCCTTACCTACCCGCAGCACTAATTATCAATAACTTAGCATCATCATTAAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51043-51430 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNQ01000146.1 Escherichia coli strain EEPERB140 NODE_1510_length_168562_cov_46.665607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51043 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 51103 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 51163 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 51223 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 51283 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 51343 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 51403 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCTGCCTGTACGGCAGTGAACGATATTCATGGATACAGAGAACCGGCAGGGAATTTCTAAGCTGCCTGTACGGCAGTGAACNNNNNNNNNNTCCTGAATACAATCGGGTGTCATGTTGATTTTCTAAGCTGCCTGTACGGCAGTGAACTCACCACGATTCGGCATCTCACCCTTCGAGACTTTCTAAGCTGCCTGTACGGCAGTGAACGTTTATCTCTATCACGCGTATCTCGCGTACATTTTCTAAGCTGCCTGTACGGCAGTGAACAGATCAAACGTCAGCCCGGCGGTAATTTGCCGTTTCTAAGCTGCCTGTACGGCAGTGAACNNNNNNNNNNCTTCAACCGGGTTACCGTTCTTGACGTCTTTTCTAAGCTGCCTGTACGGCAGTGAACTTTTGTTGTGTACGGATCCTCCGACTCAGCACTTTCTAAGCTGCCTGTACGGCAGTGAACTNNNNNNNNNNACTCCGAAAAATTGAGCGTCGAGCACTCGCCA # Right flank : ATGAATTTCTCCGCGCTGCAGCGCGATGTCATCGTTCACTGCCGTACAGGCAGCTTAGANNNNNNNNNNGCACCGCGTCACGCGCGGGCATCGTGCATTTCTAAGCTGCCTGTACGGCAGTGAACCGTATTAACGGTGAGGTTTATCGCCTGATTGTTTTCTAAGCTGCCTGTACGGCAGTGAACGTCTCACTCCGCGTGAGTGTGAGCACCTCCAGTTTCTAAGCTGCCTGTACGGCAGTGAACGTATTGTCGGCGCATACCGCATGACCGCGTTCTTTCTAAGCTGCCTGTACGGCAGTGAACNNNNNNNNNNTAGCGTGAGGCGGGTCGGAATATTTAACGTTCACTGCCGTACAGGCAGCTTAGAAAACATCATGAACGCACAGCAAAATGCCGCGATTGTTCACTGCCGTACAGGCAGCTTAGAAACCAAAAACTGGTGAACGCGGATTACCCGGTCAAGTTCACTGCCGTACAGGCAGCTTAGAAAATACAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 51735-51527 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNQ01000146.1 Escherichia coli strain EEPERB140 NODE_1510_length_168562_cov_46.665607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51734 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 51674 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 51614 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 51554 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCTAAGCTGCCTGTACGGCAGTGAACACAAGCTGATTCCTCAAAGGCTCATTTCAAATTTTCTAAGCTGCCTGTACGGCAGTGAACATGGCGACAACAAAACCATCAAATGCCGTATNNNNNNNNNNTTTCTAAGCTGCCTGTACGGCAGTGAACAAGTTTTCGGCGTCGGTAATGCAGTCATGACGTTTCTAAGCTGCCTGTACGGCAGTGAACAACCGCAACCGCGTCAACGTGTATGCCGACNNNNNNNNNNCTAAGCTGCCTGTACGGCAGTGAACTAGCCCCCCTTGCCAGTTGTTCGCTACTGTATTTTCTAAGCTGCCTGTACGGCAGTGAACTTGACCGGGTAATCCGCGTTCACCAGTTTTTGGTTTCTAAGCTGCCTGTACGGCAGTGAACAATCGCGGCATTTTGCTGTGCGTTCATGATGTTTTCTAAGCTGCCTGTACGGCAGTGAACGTTAAATATTCCGACCCGCCTCACGCTANNNNNNNNNN # Right flank : TGCACGATGCCCGCGCGTGACGCGGTGCNNNNNNNNNNTCTAAGCTGCCTGTACGGCAGTGAACGATGACATCGCGCTGCAGCGCGGAGAAATTCATTTCTAAGCTGCCTGTACGGCAGTGAACTATATGAACCGCGATGCAGCGATTCACCGACCTTTCTAAGCTGCCTGTACGGCAGTGAACAATATCAAAGCGTTCCCGCGCTTGCGGGTATCTTTCTAAGCTGCCTGTACGGCAGTGAACGATTATTGGAAGGTGGGCGACCGCCGCCAGTTTTTCTAAGCTGCCTGTACAGCAGTGAACCATCATTTCCGCGCCTAACGGATTTTTGTCAGTTTCTAAGCTGCCTGTACGGCAGTGAACGAGTTCGTATCCCACGTTTGCCGTTACAAGTTTTTCTAAGCTGCCTGTACGGCAGTGAACCATATGGCGATTTATGCAGGCAAAGGTATTCATTTCTAAGCTGCCTGTACGGCAGTGAACTGGCGAGTGCTCGACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 51773-52604 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNQ01000146.1 Escherichia coli strain EEPERB140 NODE_1510_length_168562_cov_46.665607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 51773 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 51833 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 51894 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 51954 28 89.3 37 .........................NNN NNNNNNNGTCGGCATACACGTTGACGCGGTTGCGGTT 52019 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 52079 28 100.0 41 ............................ NNNNNNNNNNATACGGCATTTGATGGTTTTGTTGTCGCCAT 52148 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 52208 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 52268 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 52328 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 52388 28 96.4 39 ...........................N NNNNNNNNNAAAAGCCGCCCCCATGAACGCTGCAAAAGG 52455 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 52515 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 52577 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 14 28 99.0 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCAATAATCGTTCACTGCCGTACAGGCAGCTTAGAAAGATACCCGCAAGCGCGGGAACGCTTTGATATTGTTCACTGCCGTACAGGCAGCTTAGAAAGGTCGGTGAATCGCTGCATCGCGGTTCATATAGTTCACTGCCGTACAGGCAGCTTAGAAATGAATTTCTCCGCGCTGCAGCGCGATGTCATCGTTCACTGCCGTACAGGCAGCTTAGANNNNNNNNNNGCACCGCGTCACGCGCGGGCATCGTGCATTTCTAAGCTGCCTGTACGGCAGTGAACCGTATTAACGGTGAGGTTTATCGCCTGATTGTTTTCTAAGCTGCCTGTACGGCAGTGAACGTCTCACTCCGCGTGAGTGTGAGCACCTCCAGTTTCTAAGCTGCCTGTACGGCAGTGAACGTATTGTCGGCGCATACCGCATGACCGCGTTCTTTCTAAGCTGCCTGTACGGCAGTGAACNNNNNNNNNNTAGCGTGAGGCGGGTCGGAATATTTAAC # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAACTGCGTATCACGCAACCGAGGCCAAGTTCACTGCCGTACAGGCAGCTTAGAANNNNNNNNNNATAAAATCATCAATCTGTTCGACGCCAGGTTCACTGCCGTACAGGCAGCTTAGAAAAGGCGGCGTTTGAGGAACGCATGGCGCTGTGGAGTTCACTGCCGTACAGGCAGCTTAGAAAACGCCCAGCGACTGACACCGATTGTGGTCCCGGTTCACTGCCGTACAGGCAGCTTAGAAAGCTGGCGTAACTCGTCCAGCGTTTCGAATAATGTTCACTGCCGTACAGGCAGCTTAGAAATGCTAAATTTTTTAATGCTGCCATTTGTTAGCGTTCACTGCCGTACAGGCAGCTTAGAAAGTACACATTCGCAATCAAAATATATCTGCTAAAGTTCACTGCCGTACAGGCAGCTTAGAAACTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 52705-53467 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNQ01000146.1 Escherichia coli strain EEPERB140 NODE_1510_length_168562_cov_46.665607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 52705 28 96.4 37 ...........................N NNNNNNNNNATAAAATCATCAATCTGTTCGACGCCAG 52770 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 52831 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 52891 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 52951 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 53011 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 53072 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 53133 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 53193 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 53253 28 92.9 37 ..........................NN NNNNNNNNGGAAGAAAAACCAGCAGCGCCACCGGAAG 53318 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 53378 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 53438 28 85.7 0 ....................A...C.CT | T,C [53458,53462] ========== ====== ====== ====== ============================ ===================================== ================== 13 28 98.1 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGTTCACTGCCGTACAGGCAGCTTAGAAAGCTACAAAGCGGCCTTTTTTATGCGGTGTTCAGTTCACTGCCGTACAGGCAGCTTAGAAAAGCCAGAATTCTGCGGCGATATCGAGCGCTTCGTTCACTGCCGTACAGGCAGCTTAGAAAGACACCGGATTACCCTGGTCAGCCAGGAATGTGTTCACTGCCGTACAGGCAGCTTAGAANNNNNNNNNNAAAAGCCGCCCCCATGAACGCTGCAAAAGGGTTCACTGCCGTACAGGCAGCTTAGAAATACATACTCAAACGATTACTGAATCACAAAACGTTCACTGCCGTACAGGCAGCTTAGAAAACATTGCAATTAACTGATATCGCACCATCATCGGGTTCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAACTGCGTATCACGCAACCGAGGCCAA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 62526-62673 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNQ01000146.1 Escherichia coli strain EEPERB140 NODE_1510_length_168562_cov_46.665607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62526 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 62586 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 62646 28 89.3 0 .........................NNN | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : NNNNNNNNTTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACGGTTGACTACCGTACAGGCAGTCTTCAAACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //