Array 1 204628-204112 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCZX01000006.1 Edwardsiella piscicida strain S07-1019 Edwardsiella-piscicida-S07-1019-contig-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204627 28 100.0 33 ............................ CGTGAGAAGTTGCAACGGCGTTACGATCGCGGC 204566 28 100.0 33 ............................ CGCTGATTCTCTCGATTACATCAAAACGCTGCC 204505 28 100.0 33 ............................ TGCTGACCGAAGCCATTGCTAAGATGCAAGCTG 204444 28 100.0 33 ............................ TCGTCACCATCGAGGATGCCCTGGCCGGTGGCT 204383 28 100.0 33 ............................ TAACAACACGGTAATCGACGTCAACGGTCGTCA 204322 28 96.4 33 ..C......................... CCCGGCATGGTCTGGCGGCTTGTCTATTGTACT 204261 28 96.4 33 ..C......................... CGAGGGAGCTACCATCGAGAGCAGCCGTTAGGC 204200 28 96.4 33 ..C......................... TACGGATTATCCCGCCTATCTGGTAGCTGATAT 204139 28 96.4 0 ..C......................... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.4 33 GTTTTCCCCACGCCTGTGGGGGTGTTTC # Left flank : GAGGCGAAGCGTTTCCCAATGCCAAGAAAATCATGTAGAGCGCGAGCGTTACAAAGTAGAACGGATTCATTGGAGATAGTACCGTTGAAAACGGGGATGAGTTGACTGGTCATTTTTTGCGTCCTAGTAGATTGTTGATTACCCCTGTTGATAAGGGTGGTCGGGTACTTCAACACCGCTACTAGACGGCCTGTAGTTTTTCCCAATAAGTTGGGTGTTATATGTACTACACGCTACCCGACCATAATCTATGGACGTAAAAAACCGCATATCTGTCGGGTGCGGAGCTCCGCTAGTAGACGGTGTGTTGAGCACCTGAGCGGACTATACCCCCGACGCCGCGGGTAAAACCAATTCCGATTTATGATACTTTACTTACAAATCATAGGAATTCAATGAATCATTCTAGCCTGACCATACAGAGCCCCATCTGGCTATTCGACCAGTAAACCAACCACAATCTGTAGCTGGTTTAGTATGTTCTTTAACAATATAATGGG # Right flank : TGGTTACACTGGGGGTATGTACAGAAAGCTGATGAGTCATTTTTCTGTGTCCTACGTATATGTTCAAATTTACCCTGTGTTCGGCAGGGAGGCCGGGTACTTGAACACCGTAGAAAGGTCGGCCAGCAGTTTTTCCCTTGCGGGTGTTGTATGGTCTGCTCGCTACCCGGCCATATCTGAAAGTATGGACACAAAAAAACCGCATGTCTGACGGGTGCGGAGGCCGCGTTGAAAGGTGTTTTCAGCACCTGAGCGGACTATACCCCCCGACGCCACGGGTAAAACCAATTCCGTTTTATGATACTTTACTTACAAATCATAGGAATGCAATAACCATCCCCTTGGAACAGTGAGTGGCATATATTTCCTAATTCTCTTAAAAACCGCCCATTCCAGGACGCCAATCCCAGCAACAGATTTTGCCGCTGCCACTACTCTCTAGCGCTCACAATTCCGATGGGCAAGAACTTGCGAAAACATAACAATATTGTTATGTTTCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGCCTGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17749-17294 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCZX01000007.1 Edwardsiella piscicida strain S07-1019 Edwardsiella-piscicida-S07-1019-contig-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17748 28 100.0 33 ............................ CCCTAGATGGCTCTTTTACTTTGTTGATGGCCT 17687 28 100.0 33 ............................ TCCATGATGGCCGCTTTCAGCTCACTCCAGTGG 17626 28 100.0 33 ............................ CTTCATTATTCCTGGCGACTTCAAAAAGAACTC 17565 28 100.0 33 ............................ CGCTGGCAGACAGAGATGGCCTTAGCCCTTGGA 17504 28 100.0 33 ............................ CCATCCCGCCGATCGTGGTGGCCCGACGAATTG 17443 28 100.0 33 ............................ TTCCTCAGTCATTCCTGGGAAGTTGCTTATCAC 17382 28 100.0 33 ............................ CTCTTTCCCGTGGTCTCGGTTGTTATCTTCGAC 17321 28 89.3 0 .........................GGA | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : GAATCTCTGTATCGATCTTGCCTTCTCCCTGACGCGTGAGATGGCGGGGCGTTATGAGAAGGCTCTGGTTTCATCTCGTTTTCGAGAGCGGGTGATAGAACTGAATTTGCTCGCGAGTGTAGCCAGAGATATACCACAGCTACTTGGAGGGGCAAATATTGATGCTGATAGTTCTCGCTAACGATTTACCTCCAGCAGTTCGAGGACGAATGAAACTTTGGTTTATTGAACCGCGGCCAAATACCTTCGTTTCCGGTATCAAGGATTCGGTTGCTGACACCGTGATCGAATACCTTTATCAACACTGCTCACCGGCAGCGGGTGTGGTGATATTTAAAAGCATTGCTAGAGCACCGGGGTATCAGATCCATACCATAGGATCACCGACCAAGACGCTCTGTGAGATAAATGGCCTGCAGTTGGTGGTAGAGAAGCGACTCAACCAGTAAGTCAACCACAATATGTAGTTGGTTTAGTATGCTCTTTAACAATATAATGGG # Right flank : CTGACCCCAATACCTTTCTTGCCTCATCTCGTTTAGTGCTTGCTTCCGCAAGTGTGATGTCCGGGTAGGTTCCGAATGAGAGCTTTTTCTCTTTGCCGGCAAATCGATATTTCATCCGCCAGTATTTTGAACCGTTAGGGTTGACCTGGAGATACAGTCCACCACCGTCAGCGAGTTTATAGGCTTTGTCTCTGGGCTTTGCAGTCTCGACCTGACGCGCATTTAAGGTCGTTTTTGGGGGCCTCATTTTTCATTGAACAGGATAAGCCCCCACTAAGGCCCCCAAACGTTTATAGATTCACGTTGAGATGGGTAGATATCCGTTGACGTCGCATAGCCAGAAAAGAGGGTTTATCACTGATTATAAGAGGGTTTTATTGAGTTTGGTCGATGTCAGGAGAGGGGGGATGGCGTTCCCTGCATACGCCGAAGTTGATATGCAGGGATTTGATATAATTGTGTTTTTATGTGTTCGTTAAACTTTTTACCCGCAATTTTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //