Array 1 36-310 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPI01000012.1 Salmonella enterica strain 72_18 NODE_12_length_108289_cov_62.0178_ID_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 97 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 158 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 220 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 281 29 96.6 0 ............T................ | A [308] ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGGGGCGTCACCATTTTTGAATTTATCAGCCGCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1893-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPI01000028.1 Salmonella enterica strain 72_18 NODE_28_length_18708_cov_58.3796_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1892 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1831 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1770 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1709 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1648 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1587 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1526 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1465 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1404 28 96.6 33 ....................-........ GCCGAACGCTCAACGGGGAGTGATCGAGAATCT 1343 29 100.0 32 ............................. CGCTCAGGAAATCAAGGAGAAGCGGGTGCGTA 1282 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1221 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1160 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1099 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1038 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 977 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 916 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 855 29 100.0 30 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTG 796 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT G [792] 734 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 673 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 612 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 551 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 490 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 429 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 368 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 307 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 246 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 185 29 100.0 32 ............................. ATCGAATGCTTTGTGTGTTTCTGCTGCCACTT 124 29 100.0 34 ............................. GGGGCGTCGACCATTTTTGAATTTATTCAGCCGC 61 29 100.0 0 ............................. | C [47] ========== ====== ====== ====== ============================= ================================== ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGACCAAGGCCTACCCGCGCGGCTAGTTCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 371-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPI01000005.1 Salmonella enterica strain 72_18 NODE_5_length_375981_cov_63.9954_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 309 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 248 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 187 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 126 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //