Array 1 286723-284713 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEA01000004.1 Escherichia coli strain MOD1-EC6046 MOD1-EC6046_4_length_341908_cov_40.0206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 286722 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 286662 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 286602 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 286542 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 286482 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 286422 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 286362 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 286302 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 286242 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 286182 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 286121 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 286061 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 286001 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 285941 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 285881 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 285821 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 285761 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 285701 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 285641 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 285581 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 285521 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 285461 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 285401 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 285341 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 285281 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 285221 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 285161 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 285101 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 285040 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 284980 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 284920 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 284860 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 284800 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 284740 27 92.9 0 .......................C-... | T [284721] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 296350-295780 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEA01000004.1 Escherichia coli strain MOD1-EC6046 MOD1-EC6046_4_length_341908_cov_40.0206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 296349 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 296289 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 296229 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 296169 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 296109 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 296049 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 295989 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 295929 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 295869 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 295809 28 85.7 0 ....................T...C.CT | C,A [295783,295786] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //