Array 1 62651-59785 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEW01000003.1 Streptococcus ruminantium strain MO512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 62650 36 100.0 29 .................................... TTACAGATCGTAACTTTTCATTGTTACCG 62585 36 100.0 30 .................................... ATCGTGAACGTTAGGTGTATATTCATATGT 62519 36 100.0 30 .................................... TAAAATTGTTCGAGAAGGAAAAACTGGACG 62453 36 100.0 30 .................................... ACAGCCCACTTTTTTTCATGTTGGTCTTTA 62387 36 100.0 30 .................................... ATATAAATATGACCCTCTATAGCTTTGATG 62321 36 100.0 30 .................................... TCTTAAGTTCCTCAAGATTATAAAGTTCTT 62255 36 100.0 30 .................................... TCTCAAGTAGATTCAGTAACAACTCGTGTC 62189 36 100.0 30 .................................... AACCATAATCGTTTTGTTTTGTGTCATTAC 62123 36 100.0 30 .................................... TCCGACTGTCTAAGAAAGGATTAAATGTAT 62057 36 100.0 30 .................................... CCAATTCAGATGCCCATGATTTAAGTTTAT 61991 36 100.0 30 .................................... CACGTTCCTCCTTTTCCTCCTTCCAGAATA 61925 36 100.0 30 .................................... CTTATCAGTCATGTCTACCTCCTGAATAGA 61859 36 100.0 30 .................................... AGAAGGGTATAGAAAACTTTGCTACGAATT 61793 36 100.0 29 .................................... TTTGTAACGAGGTCCAAATCTTGTTTATC 61728 36 100.0 29 .................................... CATTCTAGCGGCTTAGAATAACGCACTGA 61663 36 100.0 30 .................................... TCTTTGCCACAATCCAAACCATACTAGACC 61597 36 100.0 30 .................................... GCTATCGATGAGTATCCATCATCTTGCTGC 61531 36 100.0 30 .................................... TTCTGGGAATGATATACTTGAATCATAAAG 61465 36 100.0 31 .................................... AATCAATCTCTCCAGTCATCTTATCCGCCCG 61398 36 100.0 30 .................................... TCCTTTCTCATCACTACAATATATTCCTTG 61332 36 100.0 30 .................................... AAATGATTCGGAAGCTAGCTATGTTCAACG 61266 36 100.0 30 .................................... TCCTTCTTTTAAACCCATCATCCATGCCAT 61200 36 100.0 30 .................................... AATTCTGGTATTCACGAAGAGGAAGACGTA 61134 36 100.0 30 .................................... AGATTCTAGACCTACAATGTTCTAAATCTA 61068 36 100.0 30 .................................... TGTCTAGCTCGCTTTTATTTCTACGCAAAT 61002 36 100.0 30 .................................... TGATAGCTATGATATTCTCGAGCAAAACTA 60936 36 100.0 30 .................................... AGTTTCCTTGCTTAGCAGCTTCTGCTTTTT 60870 36 100.0 29 .................................... TATACATTAAACTGTAAGTAAGTTAACAC 60805 36 100.0 30 .................................... TATTTTGTTTCTTGGCTTTAACATGAGCGT 60739 36 100.0 30 .................................... CGGTGGGTAGCGTTGGAGGAGTTGCATGAT 60673 36 100.0 30 .................................... ACGCAGTAAGAGTTCCGGATATTTCTGGTA 60607 36 100.0 30 .................................... TCAAAGCAACGTTCTTTAATGTCCTTCCAT 60541 36 100.0 30 .................................... TTCCAAACGCTCTGACCGTTAACTTTAATG 60475 36 100.0 28 .................................... GTCACTATTTATACCCTAATTGCTAAAG 60411 36 100.0 29 .................................... TCTTATAGGTTCTATGAAACTACTTCAAG 60346 36 100.0 30 .................................... TTTTGCTAAGTTCACAGAATCTCTCAAGAA 60280 36 100.0 29 .................................... CTAATCTAGTTCGTGCTAAACAGACATTG 60215 36 100.0 30 .................................... GCATATATTCAGCTTGAGCTTCTACACCGT 60149 36 100.0 29 .................................... GGGGGAAGGGGTTGGACTACGCTCTGTAT 60084 36 100.0 30 .................................... AAGCAATCGTTGATATTAGCGACGAAGGCA 60018 36 100.0 30 .................................... TCGCCATCCAGCTGAATAGCACCAATCCAA 59952 36 100.0 30 .................................... TAATGAAGCAATAATGTAAAGCAAAAAGTG 59886 36 100.0 30 .................................... TTATCTGTCTGCTAATTGGGCTAGTTCTTT 59820 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATGTTGATAGGGATTATAATTGGAATAAAGAGAGTATAAAAATCATTTGAG # Right flank : CTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAGTAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //