Array 1 1362487-1357952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007030.1 Thiomicrospira aerophila AL3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1362486 28 100.0 32 ............................ ATTGCGCGCAAAGATTGAGCGCTCACCGTACT 1362426 28 100.0 32 ............................ GCCGAGGGCGTGCCGTGTTTATAGTGAGTAAA 1362366 28 100.0 32 ............................ AGTAAGGAAACCGAAACAATGGAAAATCAAAA 1362306 28 100.0 32 ............................ AGCAGATTTGGGCAGAGGTGGCCGAACTGTAT 1362246 28 100.0 32 ............................ TTATCTTGATCAACGTGAGATAAGCAACGGTT 1362186 28 100.0 32 ............................ AGCGGAAAAACCGCCAGCGAATGATAATATGC 1362126 28 100.0 32 ............................ TCCAAGAGCCTATAATCGTATAGTCAGTTAAC 1362066 28 100.0 32 ............................ ATCGGATTTCCATTTTAGGTCATAAAGCGAAT 1362006 28 100.0 32 ............................ TTTACGAGCAATTAATGCGGGTACAGACACGC 1361946 28 100.0 33 ............................ CAAAGCATTAGCTTATTAGCGAAAGCCGGCACT 1361885 28 100.0 32 ............................ ATCAAATTCGACCATCGGCAATCCGATCAACT 1361825 28 100.0 32 ............................ AACTAAAATAATAAGCCCTGCGTCGCCTTAAT 1361765 28 100.0 32 ............................ AAGAGTACACGCTGGCAGAGTTAAGCGCGTTA 1361705 28 100.0 32 ............................ TGCGCGGCTTCGCCTTGCTCAAAGCCAAAGCT 1361645 28 100.0 32 ............................ TCGTACTCGATACGCCTAGCGTATGGCATATT 1361585 28 100.0 32 ............................ AAGTGGTTGGTTCACCATCTTCAAGTCCTGCG 1361525 28 100.0 32 ............................ GTGCCACTGCTTTGATAATGGGCTAGCTGCCT 1361465 28 100.0 32 ............................ CATAGTTTATCAACGTACTCCCCGTGGTCAGG 1361405 28 100.0 32 ............................ ATCTTGCAAACGTGCATCAACGTACAATTCCC 1361345 28 100.0 34 ............................ CTGAACCCCTTGCGTCACCATCGCCTGAGCGTTA 1361283 28 100.0 32 ............................ ATGTTGAAGCCGCTCAAAATGTTTGAGGCAAT 1361223 28 100.0 32 ............................ TTGCGGAATGTGCCGTCCAGTTCGCCCAATTC 1361163 28 100.0 32 ............................ TGCTGATCAGGTTAAAGCGGTTAGGGCAATCT 1361103 28 100.0 32 ............................ TGAAAATTGAGATCGTAAAACTTGAAACTAAG 1361043 28 100.0 32 ............................ TAAAAAACTTGGGTCTTGGTACTGTGCATTTA 1360983 28 100.0 32 ............................ TCGTCATAATCCGCTGAAATAAAACCCTTGAG 1360923 28 100.0 32 ............................ CACCATCAAAACCTCGGACGCGATACCGGATA 1360863 28 100.0 32 ............................ TGGCGCAAATTCCCGCTTGCGTCGGTGGTTTT 1360803 28 100.0 32 ............................ GTCACGGATTTGGGTTAATAGATCGGTTTGAT 1360743 28 100.0 32 ............................ ATCATTTGAGCCGATCCGCTGACTGATTGGCC 1360683 28 100.0 32 ............................ TGTGCGTCAATCCATTTTTGAGCGATTTGCGC 1360623 28 100.0 32 ............................ TGCCACTGGCGTGGTTAATGTGGGCGCTGGCG 1360563 28 100.0 32 ............................ AATAAGAAATCAGGGCGAATGTTCAAAAACGC 1360503 28 100.0 32 ............................ GTATTGATGCCGAGCGTTTGGGCAAGTATATC 1360443 28 100.0 32 ............................ AAGGGCAGCCGGGCGGCAAACGATAACGCGCC 1360383 28 100.0 32 ............................ AAAAGGTCGAAAACCTTGAGGAATCCATAAGC 1360323 28 100.0 32 ............................ AAGTCGCCCAGGCACAAAAACTCATTTTAGAT 1360263 28 100.0 33 ............................ TTGATAAACAGGTGCTTATCTTGGTCTTTCACT 1360202 28 100.0 32 ............................ TGGTTAATTGAGCATTTTAAGCGGCTGGATAA 1360142 28 100.0 32 ............................ ACGGATTATTCCAAAGGCGAAAAAGTCGTAGA 1360082 28 100.0 32 ............................ ATCAACTTTAACCGCACCTGATCCATTGGCTA 1360022 28 100.0 33 ............................ ATGTATTCAGGCGTGTTGTTTACAGCGTTACGT 1359961 28 100.0 32 ............................ GCAGAGTTATACAGTTTAGCTTTACTAGATAA 1359901 28 100.0 32 ............................ ATACGGCAATACGTTTGGAATCGGCATGATAC 1359841 28 100.0 32 ............................ AGTTGAAGATACTGAGCGCGATATTTTGCCCC 1359781 28 100.0 32 ............................ ATTTTTCCAGCGATTTTGAAAACCCGTTCGGG 1359721 28 100.0 32 ............................ TAACAGCATGAGCAACTGCAACGCCACGCAAT 1359661 28 100.0 32 ............................ ATCGCTGGCCTGGGCGTTTTGGCTCGGCCGGA 1359601 28 100.0 32 ............................ TGATACTCACCCGCTTTTTTCTCGGCCTTGCT 1359541 28 100.0 32 ............................ AGCAAGGGCGGGTTTTTTGAGTGGGAGGACGG 1359481 28 100.0 32 ............................ ACTCTACTCTGTCAAATATATCTGCTGTGAAA 1359421 28 100.0 32 ............................ TACACGCGGATAGCGTTTTAATCCTACAATAC 1359361 28 100.0 32 ............................ TTGGACTCGTGTCAATAACTGTAACCAGTCAA 1359301 28 100.0 32 ............................ AACCGACCAGCTAATTTACCCAGTGATTAGTT 1359241 28 100.0 32 ............................ ATGCTAGGCCGTGGTTTGAGAGATCGCCGAGA 1359181 28 100.0 32 ............................ AGTGGAAAACAATACGAGCGCCTATGTTGATC 1359121 28 100.0 32 ............................ TTTTAGCACACGGTTTAACCCATCGCCTGATT 1359061 28 100.0 32 ............................ AGCACGAAAACGGCCAAGGGATTGATGAAAAG 1359001 28 100.0 32 ............................ AGCACGAAAACGGCCAAGGGATTGATGAAAAG 1358941 28 100.0 32 ............................ CTAACCTGCGCGTCATTGGGCTAAGTGCTACA 1358881 28 100.0 33 ............................ AATCTATCAAGGTTTGCACCGTGACTTTCATAA 1358820 28 100.0 32 ............................ AACAAAATGCGGCCCGGCTCTGCCGACGCACT 1358760 28 100.0 32 ............................ TTGAAAGCCGTTCAAACCGATTTCCACCACAT 1358700 28 100.0 32 ............................ TGGTCAACGTGAGGCAAGGCAACCGCCCCCAG 1358640 28 100.0 32 ............................ ACGTTCGGGCACGGGCTAACTTACCTGACCGA 1358580 28 100.0 32 ............................ ACAGAAAAACGCTATCCATCTGATGAAGCTCA 1358520 28 100.0 32 ............................ AAAAACGTCTTCTCCCTTGGCTGAAAAGTCTT 1358460 28 100.0 32 ............................ TGATAAAAAACCTAAACTGCGTATCATCTAGC 1358400 28 100.0 32 ............................ AGGAGGCGGCCGCTAACGTCGCCAAAATGAAA 1358340 28 100.0 32 ............................ AGAGGACGCGCGCAACATAACGGGGGTTTAAT 1358280 28 100.0 32 ............................ TTGTGTGGACGGCTGCAAGAGATAGCGAATTT 1358220 28 100.0 32 ............................ ATCAGCAGGCTCAGTTATGGTAGGTGGCTTTC 1358160 28 100.0 32 ............................ ATCTCTGTGAACAGCCTCATTGATATCACCTA 1358100 28 100.0 32 ............................ AATGCTTAAGCCATGGGTATGAGCGCCCGCTG 1358040 28 92.9 32 ......................T....G ATCAGCTACAACTTTTGTTTCACCCGTGCTGG 1357980 28 82.1 0 ....A.............TA.....T.T | G [1357956] ========== ====== ====== ====== ============================ ================================== ================== 76 28 99.7 32 GTTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : CTGTATTGCAAAAGCTGGATTTGAAGAAAAAATTTCATAATTATGATGACTATCTACACATTACCCAAATTCGGCAGGTTCCCGAAAATGTTAATGGCGTGATAATCTTCAAAAGATACCAACCTAAGCAAAATAGCCAAAGCCATGCAACGCGTTTGGCGAAACGTCACGGCTTGTCGGTGGATGAAGCATTTGGGCTACTCAATGCCAAACCAGCGCAACCCTTGCCCTTTATTAACCTGAAAAGCCTTAGTTCAAAACAGGACTATCGCTTGAGGATTCAAAAACAATCTATAGACTCAAGCCAGCAGCAAGAAGTAATATTCAATGCCTACGGCTTAAATAATCCGGTGCCGGATTTTTAGATTTAACCCAAATTTTTAAGCGTTCTTTAAAAGCTTGGAAAAACATATACTTACGATGCAAAAGTTTTTTTGCGTAAAAAAGCTAAAAGTAGCGTAAGTTATTGAAAACAAACTTTCCTAATTGGAAAGTTTCTA # Right flank : CGGATATTCCAAAATATATTTAAGATTTATCGTCTTGTTAAAATCTTAGATACGCAAGATGGTTTTGAATAACGTATAGTGCTCTTAAAAGGAAATTAAGTATGAAAATGATGTCACTGGACGAGTTAAAAAAGGAAGCGTTTAAAAATCCTCATTTTAAAAAAGAATATGATGCGCTAGAGGATGAATTTCAGTTTATTGCGACCTTATTAACTATGCGCCAAAAAGCAGGTTTAACGCAGGATCTGCTTGCTGAAAAAATGGGTACAACTACACGCAGCATAATTCGCCTAGAGTCTGGTTCCGGTAATCCCGGTTGGAAAACCTTGCAAAAATATGCGCATGCCTGCGGCTTTAAAATTCAGCTGCAATATACACATTAAGATCTTTTAGACGACTATTCGCTAACCTCAGTGCTCTTTAAAATACGGAACTTTAGCGATGATAAAAAATAGTGCATTTATTCACCGTAATGAGTTTTAGCACGAATGATTAAGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //