Array 1 1231361-1234419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051329.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM 34514 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1231361 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1231422 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 1231483 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 1231544 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 1231605 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1231666 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1231727 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 1231788 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 1231849 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 1231910 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 1231971 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 1232032 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 1232093 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 1232154 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 1232215 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 1232276 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 1232337 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 1232398 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 1232459 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 1232520 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 1232581 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 1232642 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 1232703 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [1232723] Deletion [1232743] 1232745 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 1232806 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 1232867 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 1232928 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 1232989 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 1233050 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 1233111 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 1233172 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 1233233 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 1233294 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 1233355 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 1233416 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 1233477 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 1233538 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 1233599 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 1233660 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 1233721 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 1233782 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 1233843 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 1233904 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 1233965 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 1234026 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 1234087 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1234148 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1234209 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1234270 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1234331 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1234392 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1250965-1253435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051329.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM 34514 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1250965 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1251026 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1251087 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1251148 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1251209 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1251270 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1251331 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1251392 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 1251453 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 1251514 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 1251575 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 1251636 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 1251697 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 1251758 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 1251819 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 1251880 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 1251941 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 1252002 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 1252063 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 1252124 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 1252185 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 1252246 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 1252307 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 1252368 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 1252429 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 1252490 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 1252551 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 1252613 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 1252674 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 1252735 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 1252796 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 1252857 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 1252918 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 1252979 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 1253040 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 1253101 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 1253162 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 1253223 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 1253284 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1253345 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 1253406 29 100.0 0 ............................. | A [1253433] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //