Array 1 815-2038 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQME01000022.1 Neisseria meningitidis strain M22437 M22437_HUY2364A35_ctg_25885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 815 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 881 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 947 36 100.0 30 .................................... CTGACCACACCTATCCGCCAGTGCTTATGC 1013 36 100.0 30 .................................... AAGCCGGTTTATGGCAATTCTGCCGCGTCC 1079 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 1145 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 1211 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 1277 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 1343 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 1409 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 1475 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 1541 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCGGTGGT 1607 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 1673 36 100.0 30 .................................... TTGCGCATGATGGCAACGATAATTACCATC 1739 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1805 36 100.0 30 .................................... TCATACCCAAATCATCGGCATCCTGTTGGT 1871 36 100.0 30 .................................... AATGACGGCAGACTACGGAAACGAATTCTG 1937 36 100.0 30 .................................... TCAAACGATGCGCTGCCGTTTTTGCGGTCG 2003 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //