Array 1 95454-97435 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFX01000014.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 89-0307 NODE_14_length_116347_cov_2.64587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95454 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 95515 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 95576 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 95637 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 95698 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 95759 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 95820 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 95881 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 95942 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 96003 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 96064 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 96125 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 96186 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 96247 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 96308 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 96369 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 96430 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 96491 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 96552 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 96613 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 96675 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 96736 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 96797 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 96858 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 96919 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 96981 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 97042 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 97103 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 97164 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 97225 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 97286 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 97347 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 97408 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113943-116347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFX01000014.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 89-0307 NODE_14_length_116347_cov_2.64587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113943 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 114004 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 114065 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 114126 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 114187 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 114248 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 114309 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 114370 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 114431 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 114492 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 114553 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 114614 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 114675 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 114736 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 114797 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 114858 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 114919 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 114980 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 115041 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 115102 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 115163 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 115224 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 115285 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 115346 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 115407 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 115468 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 115529 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 115590 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 115651 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 115712 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 115773 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 115834 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 115895 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 115956 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 116017 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 116078 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 116139 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 116200 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 116261 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 116322 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFX01000025.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 89-0307 NODE_25_length_66656_cov_2.81496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 24 82.8 32 -----........................ CGGCCTTTGCCCCCAGGAAACGATGATGACCA 57 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 118 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 179 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 240 29 93.1 0 A...........T................ | A [266] ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //