Array 1 233061-233806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUB010000002.1 Listeria immobilis strain FSL L7-1515 NODE_2_length_255280_cov_25.060470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 233061 29 96.6 39 A............................ ACAAAAATAAGGTGATTGTTGGGCTCGATTTTGGCAATC 233129 29 100.0 35 ............................. TCTTTCACGCTAAATTTAACCGAGGAAGTGTTCAA 233193 29 96.6 35 .........................G... ATATTTTTTCATGTTTTATATTTGGATATTTTTTA 233257 29 100.0 37 ............................. AAGGGATACACTGGTCAATTTAAACAAGAAGGTATTA 233323 29 93.1 36 ........................CG... TTCGGATTATGGCATACCTCTTGACGCGCCCGTTTC 233388 29 100.0 37 ............................. ACATTTTACTAATATAACAATTCTTCTTTTTTCTCTT 233454 29 100.0 36 ............................. TAAAGCGAATAGCTTAAGTACTATACCTACACAAAT 233519 29 100.0 37 ............................. GGCGTTGAAAAATCGGAGTCGAATTTTACATATACAA 233585 29 100.0 35 ............................. ATACAAGATGGAAAATACATACAATCAATCAAAGA 233649 29 96.6 36 ................A............ GTAGTAAGCAGTATATGAATATATTGGGTATCCTTT 233714 28 89.7 36 ........C.......A.....-...... GCAGGTTACACGATTGATACCACACCCCCGTAAAGC 233778 29 79.3 0 ............C.C.A......A...TC | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 96.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCTGATATTCTACTAGAAAAGGGTGCTACAGAAGTAATTGCTTGTGCAACCCATTCAGTTATGGCTGGAGATGCAACAGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTTGAAAAACTAACCACCATCTCAATCTCTCGCATTCTTGGTCGAGCAATTGAAGGTGTTCAAGAAAACCGCTCATTACATCCATTGTTTTAAAATATCATTTAAAGTAGAGACACAGTGGCGTCTCTACTTTTTTTGCACACGAAAATCTGTCGACCGCTAGTAGTGCAAAAAACACGCTAGGTCGACAGAAATTTGTAATTACCTGCAGGAGAACGATTGAGACATTTTTACAGGCAATAAAGCATAGCAAACACCCTGATTCTTCCCAAAAATAAAGCCGGTCGACAAAAAGGGACTGTTGAGGTAAGATGGGAGTAAGAGGAAAATGGAGCGG # Right flank : CTGTTTAGCTCCATAACGTAGCTGTAGCGCACATTCTTAGTTAGCCTAGCTTCGATAAAGAAGTAAAAATTAGAAATAAAAGTTTTAAACTGTTTTTCCCGACTTAATGACATAAAACAATAAAAAGACAAAAAGGGGAATATATTATGAAAAAAACATTATTTTTTTTACTTTTGCTATTATTTTTACTAGCTGGTTGCGCGGCGCAGGACGAAGAATTGTCCAAAGATACAGAAATTTATAAGGGGAATGTTATAAATGCTGATTATAAAGTGCCTCAAAACTTGACGGAACTTGTATCTGCCAGTGAAGATATTGTGCAGATGAAATTAGTCCGAAATAAAAAGAGCGGCGAAGAAAACAATACAATAAGTGAAGTAGAAATAATTAAAAGTTACAAAGGTACATATAAAACAGGAAATAAAATTGATATTTCAGAGCCTTGGTTTTTAGTTGCCGGCAAATACCAAGCTGTTGAAAACTATATTGCCCTTGAAAAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 104270-104427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUB010000012.1 Listeria immobilis strain FSL L7-1515 NODE_12_length_104723_cov_19.146991, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 104270 26 100.0 40 .......................... CTTAAATTTGCTCCACTTAAATTTGCATAAGTAAAAGACT 104336 26 100.0 40 .......................... TTCAAAGATAAATGCCGTAGAATGCTTGATGTAAAAGACT 104402 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 45 ACCTCTATATGAAAGAGGACTAAAAC # Left flank : CTTTTCTCACGCAAGCCGATAGAGATAAAACCCTATTTTCAAATTCATTAGAAGAAATCAACCAGTTTATAACTGATTACGTCCCAGCTGAAGTTCGAAAATATTCAGTTTAATAAAAGTCACTCTATGTTATATTACATAAAAAGCATAAAAGGAGATGATTGTCTTGAAAAAAAGCTTCATTCATTTATTTTTCGGAATGATTATTCTAGTAATTATCGCCCTGTATTTTTCATATGCACATCTAAATCAAAACTTTAAATGGATTGCAGGAATACTTTTGTTCTTAGGTACAATATTCAATTGGTTTTTATATCATAAGTATCTATCTAAAAAGTCTAATAAACAAGAGGATAACTAAATATTTCTTTATGGAAAATGGCTCTAAAGCGATATAGAGTATCTGGAAAACAATGTATTCTCACGCAAACCTCAAACTATTCCATTAAACGCTTTACATTTTTTACTTTAATTACTATTATTGAAGTAAGAGACATATC # Right flank : GTCTAATGTGGATAAGTCTAATAACACTTATCCATCATTTAGGTGTTTTATTTTTTTGTGATTATATGTACAATAGGAGAGAGAACAAAAAATCATTGAGGTGAAAACTATGAGAATTACCAAAGTAGAGATTAATAGAAAAAAAGTGCTAATGTCTAGGGATAGACACAGGGGAAGGTTAGTTTATGAAAGTGAAAAGCAAGATAATACTGAACAAATTGACATAGTACAATAAAAGTAGACCCAGGGTTAGAGAAAAAATGATAAAATAAAAGAAAGAAAACCCAAGTGTCAAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCTATATGAAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 52137-52964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUB010000018.1 Listeria immobilis strain FSL L7-1515 NODE_18_length_59975_cov_25.833450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52137 36 100.0 30 .................................... CTTCCTCTGCACTCCTAGCTACTCCACACA 52203 36 100.0 30 .................................... CGGATGTTGGCTATTCGATGATGTTTTCAG 52269 36 100.0 30 .................................... TGGGACTTATAAAGGGACGTTCGATAGTAG 52335 36 100.0 30 .................................... TGTTGTATAGCATGAAATCACCCCCAGACG 52401 36 100.0 30 .................................... GCCCATCGAAACGTTATTTATGATGCAATA 52467 36 100.0 30 .................................... CGAATCTGCATGGCTCGTAAAAAATGCTGC 52533 36 100.0 30 .................................... TGAAAAAAGTACTTTTACATCGTTGAAATC 52599 36 100.0 30 .................................... AAGCAAAAGGACATTTGAGAGAAGTTGACT 52665 36 100.0 30 .................................... TCTTTGCCATACGTTTTTTCTCTGACCTGC 52731 36 100.0 30 .................................... CCGGCGTAAAATATTTAAGGCGGAAATTGA 52797 36 100.0 30 .................................... CGTATCTGGTTGATGACACGCAAAATATTA 52863 36 100.0 30 .................................... AATCATCGGGTGGTTTATCGTTTTACCAAT 52929 36 86.1 0 ..............C.........G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCAAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCGTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAGGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGATTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : CAAACCATCTAATTTCGGTTTGTTTTTTTATTTGCCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATCGGCAACCAACACATTCGTTAAAACTCCTGAAATGAGACCTGGCTAAAATAGCAGATGAATATTCTCACAATGTTGTTATTTCTATTTCTAAACAAGCTCATTTAGCTGTTGGCCCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTATTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGGGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATGAAGCGTTTTATTACACATACTACAAGAAGCTATTCTGCCTATTTAATAGACATCTACACTTTGCGGACGCTTATTATAAATTTTCTTAGAATAATAATATAGCATAAATAAAATAAATCTTGATGAATTAGAAGTTTTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //