Array 1 29913-31261 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUG01000013.1 Pseudomonas aeruginosa strain MRSN321 MRSN321_contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29913 28 100.0 32 ............................ TTTCCGTCTCGAGCACATCGAACTGCTCGGGG 29973 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 30033 28 100.0 33 ............................ ATAGCGGAAGTAGATCGCGTCCGCGGGTTCAAA 30094 28 100.0 32 ............................ AATTATCAGACTGCTGCGAACAACGTGAACAA 30154 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 30214 28 100.0 32 ............................ CGCAGCGCAGGGCATTGATCAGTGCCGCCCGG 30274 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 30334 28 100.0 32 ............................ TTGTCGCTTCCAATTAGGCCGGCGCGCTTCTT 30394 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 30454 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 30514 28 100.0 32 ............................ TGATCGAGTCCAGCGAGCCGCTCGACTGGTCA 30574 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 30634 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 30694 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 30754 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 30814 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 30874 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 30934 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 30994 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 31054 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 31114 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 31174 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 31234 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40654-39786 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUG01000013.1 Pseudomonas aeruginosa strain MRSN321 MRSN321_contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40653 28 100.0 32 ............................ TATCGCCATGGTTACGTCACTCATCGCTGACT 40593 28 100.0 32 ............................ CGGCGCTCCGTTCGACGCGACAAGTCGCGACG 40533 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 40473 28 100.0 32 ............................ TTGTCTGTCACCGAGTCGACCACACCAGAAGA 40413 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCACCCTCGC 40353 28 100.0 32 ............................ AGGGGGTCAGAGGGCAGGGGGAGAAAAGCTTC 40293 28 100.0 32 ............................ CCAGGCGCCGGCTTCTTCCCAGGTGATGCCGG 40233 28 100.0 32 ............................ AGGATCGCGGCGGAATGATGTCTCGCGCCGAC 40173 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 40113 28 100.0 32 ............................ TTGCTGTGCTTGAAGAAAAGGGGTTCGTCCAA 40053 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 39993 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 39933 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 39873 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39813 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //