Array 1 17283-14851 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEBF01000012.1 Vibrio cholerae strain OYP6F09 Vc_OYP6F09_Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17282 28 100.0 32 ............................ TTAAAGCCTTCGTGCCAGGTGCAGAAGGCGCA 17222 28 100.0 32 ............................ CGCTGTCCATGCCTGTTTGCCGTTAAGCTGGG 17162 28 100.0 32 ............................ ACCACCGCCAGCCGCTTTGTACTCGTCAAACG 17102 28 100.0 33 ............................ TTCCGGTACATAATCGGGCAGAGCCTTTTTAAT 17041 28 100.0 32 ............................ TGCTCGCATCACTCGCACACCTTTTCTGCCCG 16981 28 100.0 32 ............................ TCATCGCCCGCGCCGTAGTTCGCTAATGACTG 16921 28 100.0 32 ............................ GTTTTGCGTCATCGAGCTGTAGAAGGCTGATC 16861 28 100.0 32 ............................ TCAGCAAACCCTCAAGCGGTCGCAAAAGCGTA 16801 28 100.0 32 ............................ AAGCGCAGGCGGTCAATGCGCTGCTCAGTGGT 16741 28 100.0 32 ............................ ACTGGTGCAGCATTGTTGGTAAAGCCCGTTTC 16681 28 100.0 32 ............................ GACACCACTTTTCAAGCCCCAGCTCAGGACAA 16621 28 100.0 32 ............................ GCAACAATGGCCTCCGACATCAAACGGTAGTG 16561 28 100.0 32 ............................ TTTGGTCACGTTGCGGTTTATTGTTCCGTCGG 16501 28 100.0 32 ............................ AGCACAATAAAACTCACAATGCAAAATCCGAT 16441 28 100.0 32 ............................ AAAAGCACTGATTGAGCCGACAATGCCGACCT 16381 28 100.0 32 ............................ ACTCAGCAAAAAAGCTTACTGGCAGAGCAAGA 16321 28 100.0 32 ............................ TCCACCCAGAATCTACTTTTTTCACCCTGACC 16261 28 100.0 33 ............................ GTCTGAATTCTTTAGCAGGTAATCGAGCTTTGT 16200 28 100.0 32 ............................ CAAGACGATAATCTGGAACACGCATCAGGTGT 16140 28 100.0 32 ............................ ACTAACAATACTTTCTTCAAATACACGAGTTA 16080 28 100.0 32 ............................ TTTTTGGACAACAATTCTAGTTATTGTTTTAG 16020 28 100.0 32 ............................ CGTCAAAAAAGTGATTCTTGGCGCGGCTCTAA 15960 28 100.0 32 ............................ GCAGATTCCATTGCGCGGTCGATGCGCTCTTG 15900 28 100.0 32 ............................ ATTACCGCCGCCAGAGTCAGGAAGTGGTAAAT 15840 28 100.0 32 ............................ ATGATTCCTTGATACATGCGTACTTTGCCCAT 15780 28 100.0 32 ............................ ACCAGTACAGAGCGAAAGGCCGTCAGTGGTTC 15720 28 100.0 32 ............................ TTTGTCAGTATATGCTTTGCGTTTGGTCTGTA 15660 28 100.0 33 ............................ AGTATTGTAAAGAGGAGCAAACTTGACGTTAGT 15599 28 100.0 32 ............................ GTATTAGGTCTACCCTCTACATGACTGTATTT 15539 28 100.0 32 ............................ ATGATTCATCCCCATTGATTGTAAAACCACCA 15479 28 100.0 32 ............................ TTGACGTCAGGTTTGATAACACTGCTGATAGT 15419 28 100.0 32 ............................ TCAAAAGCATCCAGTAAATGACCAAGCTTACC 15359 28 100.0 32 ............................ TTCAAATGATTGACCTGTCCGTGTAATGAATC 15299 28 100.0 32 ............................ TGTCCTCATGGTTCGGGATGTAGTAGCCGTTT 15239 28 96.4 32 ...........G................ TAAAGCGCACCATCGCGCTCTAGTTTTTCTCT 15179 28 96.4 32 ...........G................ TGAGTCTTTAGCGGGAGTGCCAGGCAAGAAAG 15119 28 100.0 32 ............................ TGGTGACTCAATGCCGTTATATAGAAAAAATC 15059 28 100.0 32 ............................ TTCAAGCAGTGGGATTTGTGTGCAGCGACACG 14999 28 100.0 32 ............................ GGTCTCTTTGAAGTCATTTGGTTGACCAGAGA 14939 28 100.0 32 ............................ ACGATAGTACCAAGGTCACGCATGTTGCTGTT 14879 28 92.9 0 ......................G.A... | T [14859] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTCGAATTTGGGGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTCAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCCTTATATATCTTATGGTTGAAGCTATCAAAGGTTGAGGGTTATATAAATGACAGTTTACTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGATTGAAGCCCCTAAAGCGACGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCCGGCCTCGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCTGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 157750-154301 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEBF01000011.1 Vibrio cholerae strain OYP6F09 Vc_OYP6F09_Contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157749 28 96.4 32 ...........C................ ATCATCACGAACTCTTGAGCGCACCAGTCAGG 157689 28 96.4 32 ...........C................ ACAAGTAAACACTGGCGTACATTGCAAGGGAT 157629 28 96.4 32 ...........C................ GAGTTGGGCGTAAATGCTGAGCCGAAATACTC 157569 28 96.4 32 ...........C................ ATTCTAGCTGCTGTTCTCTTTTTATCGTTCTA 157509 28 96.4 32 ...........C................ GTTCTTTGCTGGTGGCCTTTGATGGACTTAAA 157449 28 96.4 31 ...........C................ TTTGATATGTTCGGGTTCGAGGGCGTATCAC 157390 28 96.4 32 ...........C................ AGTAACCGCAAAAGCAAAGTTGAACTGCTGCC 157330 28 96.4 32 ...........C................ TTTAGGATTTTCTCCTCCAGTTCTGCCAATTG 157270 28 96.4 32 ...........C................ AACAGCCAGTTCGCAGATCATTGCTACGCCAT 157210 28 96.4 32 ...........C................ GTAAGCATCAAGGCACGAATCAATGATTGACT 157150 28 96.4 32 ...........C................ TATTAGCGGCTCGAATTCTATCCCATGCTCTT 157090 28 96.4 32 ...........C................ TTCCACAGGGTCAGTGGTTTCAAACTGGTAAA 157030 28 96.4 32 ...........C................ ATAGTAGGGGCTTATCCGCCTTGCGCCAGAAA 156970 28 96.4 32 ...........C................ CGGTCATGAGCGAGGCAACCGCTATTCCAATG 156910 28 96.4 32 ...........C................ AGCAGAAACCGTGATTGCTTGGCTATCGACTC 156850 28 96.4 32 ...........C................ GAATAGGTGCCGTGAGGATAGTGGTTCTGAAA 156790 28 96.4 32 ...........C................ ATGACTAGAGATGTATTCGTTTCTAAAATCTT 156730 28 96.4 32 ...........C................ GCTTGTCGGCTCCACGCCGTGTAATTTTTCAA 156670 28 96.4 32 ...........C................ TTCAGCCTCTTCAATGGCCGTGTATAGACGCA 156610 28 96.4 32 ...........C................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 156550 28 96.4 32 ...........C................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 156490 28 96.4 32 ...........C................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 156430 28 100.0 32 ............................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 156370 28 100.0 32 ............................ CCCCCGTGGGCAGTGAAGCTGTGGTAATGGCG 156310 28 100.0 32 ............................ ACTCTCGCCTGACGTATTGGAAACGAAAATAA 156250 28 100.0 32 ............................ AGCAACGCAAACAATAACAACGGAGCAGGTCA 156190 28 100.0 32 ............................ TTCTTGTAGTAATCAATGGTTAGCGGTGAGCT 156130 28 100.0 32 ............................ AGCAGAAAAGGAGGCAATCAGTTCAGCGAAAG 156070 28 100.0 32 ............................ GCTTAGTGGTCACGATTGACTCACCAGCCAGT 156010 28 100.0 32 ............................ CCAAGAACTCACGATTACAGCAATAAACACCA 155950 28 100.0 32 ............................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 155890 28 100.0 32 ............................ TCTTGAACGGTAGACGCTACCACGCGGCGTTT 155830 28 100.0 33 ............................ ACATAAGCGTAAGATCCTGCTGGGATGTTGAAT 155769 28 100.0 32 ............................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 155709 28 100.0 32 ............................ ATTGTAAGCATCGTCAGCCGTAAGCTTTACAA 155649 28 100.0 32 ............................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 155589 28 100.0 32 ............................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 155529 28 100.0 32 ............................ TATAAACGGACAGCAGATTTTTATGCTGAATA 155469 28 100.0 32 ............................ AAAATCGATGCGTCCCACCCACACCACCAAAA 155409 28 100.0 32 ............................ GTGTTTAACGACCTGACCGGTGCTGTTGTGCC 155349 28 100.0 32 ............................ CAATAGAGCTGCATCCTGGTCATGCTACATTT 155289 28 100.0 32 ............................ GTCCACCAGCATAACTCGTGAAGTGATGGTTT 155229 28 100.0 33 ............................ ATACGGCTAGAGCTTGGCGATATCGAGTGCGAT 155168 28 100.0 32 ............................ AGACGGCCATTCCACTGCAGTTTGAAAAGTAC 155108 28 100.0 32 ............................ TAGGAGAATGACATGACATTAGGTACAGAATC 155048 28 100.0 32 ............................ AAGAGTCGCTTGAACCATCAATTTTGTAATTG 154988 28 100.0 32 ............................ CCAATATCGTACCAGAGCAAAGTTCCTTGAAG 154928 28 100.0 32 ............................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 154868 28 100.0 32 ............................ TTTACCACTCGCAAAAAGATTCTGATTACCAA 154808 28 100.0 32 ............................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 154748 28 100.0 32 ............................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 154688 28 100.0 32 ............................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 154628 28 100.0 32 ............................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 154568 28 100.0 32 ............................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 154508 28 96.4 32 .................T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 154448 28 100.0 32 ............................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 154388 28 96.4 32 ...........C................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 154328 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //