Array 1 17234-16844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000008.1 Thiospirillum jenense strain DSM 216 assembly_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 17233 36 100.0 34 .................................... GAATAATTACGGTATCTCCGTAATTTATTTTAAG 17163 36 100.0 34 .................................... AATTCACCCATAGCCCATGCGGCATCTGTTGTTA 17093 36 100.0 36 .................................... GGTAACGAATAATCAGAGTTTACCATCATCACATAC 17021 36 100.0 35 .................................... ATATTATCTAAAGAAGATATATTATCTTCTAATAT 16950 36 100.0 35 .................................... TTATATGATGCGATAGTACTAACTATACTAACAGC 16879 36 86.1 0 ..............................AATA.A | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 97.7 35 GTCGGAACTGAGACCCGCTTTTTAGGGGATTGAGAC # Left flank : TGCGTGAGTTGCTGGCGCGGGATCGAGCGGCGAATGTCAAGCAGGCGGGCGGCGAGTTGTCGAATACGCTGGTCGAGTTGCTGAAAATGGCGCAGGACAGTTGGCCGGCGGCAGACTGCGCGGCGTTGGCGGCTTTGGCGGAGGAGATTTACGCCTTTGTCGGTTGGCCGAGTAAACAGAAAAAAGCGGCGCGGCAGGCGCAGATTCAGGCGTTGCGTGGCAAATAGGATGCGGGCGTGTGTGATCTGTGTCACATGTGTCACACTTGACAGCGCCGCGCAGATCAATAACGATGCGGCTGCGGCGGCAATGAAGCTAAGTTTTTCGACTTTTGCGATTTGGCAGTTTGTAACACGCAACCGCGTTTGTAAGTGCTTGATTTGTAAAAGGTCGGATACTGTCCAAAAGTGTTACTGTAGGCTAACTTTTTTCCGTGATTTTATCCGCACAAAAACTGCTTCGTAACGCTCTGATTTGTCAGGAGAAAAAAATCACGCCGC # Right flank : AACCCGCCGAATTAGGCGGGTTTTTTGTGTGACGTATGAATAGCAGCGATATAGTCAATCCAAGATAATTTGATTTGAACACGGCAATTAAGCCGCAACCCAAATCGTCATTCCCCAACATCGCCCCGCCACAACCTTGTCATCCCTAGCACCTGCGCCAGCATAGGCGATACTATTCTCCGATGAACTCACGCCCTCATCGCAGGAATGGAGCAATCACCCATGCGGCAACTCAACCCCGCCCTCGATCCCCAAACAGCACTCGCTGACTGGTCAACTGCCACGTCGGCCAACGCTGATCCCTGGACGCACTACACCTGCAAACTGGTCACGCCGTTGTACGGCGGTGGCGTCCGCGCTGCCGAAGTGGACACTGCCATGCCAATTCGCGCTGCCGGCATTCGCGGGCAACTGCGCTTTTGGTGGCGCATTGCCAACGGCCCCTTTGCCTCATCTGCGGAGATGTTCCAGCGGGAAGTGGCGATTTGGGGCGGGATCGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACTGAGACCCGCTTTTTAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 23810-23564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000008.1 Thiospirillum jenense strain DSM 216 assembly_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 23809 36 100.0 34 .................................... AAAGGCTACCCGCGCAAAACCCGATTGCCCATTA 23739 36 100.0 34 .................................... TGTGCAAAGCACCTCTGTATAAGCACAGTAATAA 23669 36 100.0 34 .................................... GAGGATTTCTCCCACCCTGCGAGCTTGAACACTG 23599 36 77.8 0 ............C.........A..T....AATA.A | ========== ====== ====== ====== ==================================== ================================== ================== 4 36 94.5 34 GTCGGAACTGAGACCCGCTTTTTAGGGGATTGAGAC # Left flank : ATCTGTTGGAGCGGGTATTAACGCCGGCGGATTTCACGACAAATGACAGCGATGGTTGCCGTTTAACTAAAGATGGGCGGGCGCGGTTTTATCAGGCGTGGGCGACGGCGCGGAAAAACTGGCCGGATTTGGAGGATGCGGCGCCAGAGGCGGTGCGCTCGCTGCGGCAGGTGTGTCAGGCGCGGATGGCGTGGCTGCGGATGGCGCTGGATAAATACAGCTAGGTGCGGGCGCGAGTGACAGTTGGTGTGATCTGTGTCACACTTGACAGCGCCGCTCAGATCAATAACGATGCGTCTGCGGCGGCAATGAAGCTAAGTTTTTCGACTTTTGCGATTTGGCAGTTTGTAACACGCAACCGCGTTTGTAAGTGCTTGATTTGTAAAGGGTCGGATACTGTCCAAAAGTGTTACTGTAGGCTAACTTTTTTCCGTGATTTTATCCGCTCAAAAACTGCTTCGTAACGCTCTGATTTGTCAGGAGAAAAAAATCATGCCGCT # Right flank : AACCCGCCGAATGAGGCGGGTTTTTTTGTGTGAACAGATAAATCGTCATTCCCACAATCTTGTGACACTGGCATTCGCGGCCGGCGCGGGCGATACTATCCACCACGCCCCGCGCTCACACAGGTTGACCATGACGCCCCACCCGCTGCTCATCCCTTCCTGCCGCATGGCACTCGCCGCGTTACTGCACGATGTCGGCAAATTCGCCGAACGTGCTGGCATCACCTCCGATCCCGCAACGTTAGAAACGCATCTGCAACTGTACGCCCGCCGTCAACCGGCCGGTTGGTACAGCCATCGCCACGCCGCGCACACTGGATTGGCGATTGATGCGCTCGAACCGTACCTGCCGCCGCTGGTCGGTCGTGACATGACGCCCTTTGCCGCGTGGAAAGAGCGCAACGCCGATGATTCGCTTATCAACGCCGCCGCGCTGCATCACAAACCAACGACGTTTTTGCAGTGGATGATTGCCACCGCTGACCGCATCGCGTCGGGTT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACTGAGACCCGCTTTTTAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3045-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000002.1 Thiospirillum jenense strain DSM 216 assembly_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================== ================== 3044 37 97.3 222 ....................................A ACAAACCGCCAAAGTGTAAAATTTGCTGACAGAAAATTATTTTGGTGGCGCGGCTGAAGTGCTGTAAATGATTGTTTTTAGTGAGAAAAAAAGCACTTTCAAACGTCAAAATTTGGGTCAAAATATGCCGTTTTTCGCAAAATTTCGGTCAAAAATGCCAAAAAGGAGGTCAGAAAATTTTTTGTATTTGCTTGAATTTTGTAGGTTTTTGCCAAAAATGCG C [3010] 2784 37 100.0 35 ..................................... ATGCTGCGACGTTTTTATTAAGTGCGCTGTGAATT 2712 37 100.0 35 ..................................... CTACATAACCTGATACTGACCGTTCGCTTTTTCTG 2640 37 100.0 37 ..................................... CCTGGACATGAACGCTGCGGCAACCACATATCCAGAG 2566 37 100.0 35 ..................................... ATAAAGTCATCTTCGTACTGTTCAAAATCACCGCC 2494 37 100.0 36 ..................................... GCTCATTCCATGCAATGGAAAGTGCCGCATTTTTTA 2421 37 100.0 34 ..................................... ATGGACGCGATCTGGAATAGCCGCGGGCTAACCG 2350 37 100.0 35 ..................................... TCCGGCTGCTGCCGCGCAATCAACCTCGCGGGCGG 2278 37 100.0 37 ..................................... ATGGCCGCGCCTTTATCTCTGGCTCCAATACTGGAAC 2204 37 100.0 37 ..................................... CCCGCCCACCCGCCTGGAAGTGATGGCGTGGCATTCA 2130 37 100.0 37 ..................................... TCCACTTGTCGTCGGTTGGATGGAACAGTACTAAATT 2056 37 100.0 36 ..................................... CAATATGACTACAGAAATTCAATTAATCGGTGGGAT 1983 37 100.0 33 ..................................... AAGCATCGATCATAGGATCGTTCAAGGCTAAAT 1913 37 100.0 38 ..................................... GCAACCGCGTCAAAAGATCGCACGGGCATCTTTGACGG 1838 37 100.0 37 ..................................... CTGCTAAAACAGTGCGTGTCGAAGATAATGCTGTTTG 1764 37 100.0 37 ..................................... GATTCGACGGTCAGCCAATCGCCGCTGTCAGCGCACA 1690 37 100.0 34 ..................................... CGCTGTCATTAAAAAACTCCAATTACCAATCGAG 1619 37 100.0 36 ..................................... CAACGGTGGGTATGTCATTAGCCATTTTGACGCTAA 1546 37 100.0 37 ..................................... AGAGCTAACTCAATCAATTCGCCTTGATTGTGGCAAC 1472 37 100.0 35 ..................................... TGCACCCTCTATGGTGAAAGTTAAAGTTAAAAGAA 1400 37 100.0 36 ..................................... ACTGGTATCATCTAAGTTAAGTTCGATCATGGTATT 1327 37 100.0 37 ..................................... GTTGGATTGACCTCAGTAACGGCGCACGGAACTCGAG 1253 37 100.0 36 ..................................... CAATGCACAAGCGGGCAATGGCGGCTATTAAAAACG 1180 37 100.0 38 ..................................... ATGACAATACCGCGTCAAGTTGACGCATTAGCTTTTTG 1105 37 100.0 37 ..................................... GGTGTTCTAAACCGACAGCCCGGATCATCATTCCACT 1031 37 100.0 37 ..................................... ATGTGTTTTGCTGCGCGAACACGCCGTGACATTTGCA 957 37 100.0 36 ..................................... TGGCCGCCCTTGTGGCCGCCTGACCGCGCATATCGT 884 37 100.0 37 ..................................... TTCACCAGTAGCGACGGTATAGAAACGAATGATTGCC 810 37 100.0 37 ..................................... AACGCCGGAAACGGCACGGAGTCTCTCTCATGTTACG 736 37 100.0 35 ..................................... AGCAATTCTAGTGCCAAAATGCCGTCCTCGGCATT 664 37 100.0 38 ..................................... GCGGCACGATCATTTTTTTCCTTGGCGCCGCATGCAAT 589 37 100.0 37 ..................................... AACCATGTCAAGTGCGTCCATGGCTTGCATACACCGA 515 37 100.0 37 ..................................... TCCAAATCCAATTTCTGACTGAACACTCATACGCAAG 441 37 100.0 37 ..................................... GTCAACTCAATTGACTTAGCAGTCGCCATTCCCTCGG 367 37 100.0 36 ..................................... TTCTTTAGTAAGGCTACATAATCCTCCTCTTCTATG 294 37 100.0 36 ..................................... ATACGAACACGAAGTGTGTCGCCGCCGATGGTGACT 221 37 100.0 37 ..................................... CAACAAGCGATTAAATCTTCGCCATTGGGATCAATGA 147 37 100.0 37 ..................................... CAACAAGCGATTAAATCTTCGCCATTGGGATCAATGA 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================== ================== 39 37 99.9 41 GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Left flank : CGGGGATGTTGGTGGCGCGGGTAGCGACGACGGCGGATGAGGTGGCGGCGCTGTGGAAGACGCGCAAAGCGTTGTCACCGGCGCTGCGGCATGTGGCGCCGAAGAAGATTAATGAGGATGTGGTGGTGCCGGTGGCGCAGATGGCGCAGTTTGTCGAGCGGTTGGCGGCGCTGGGGCGGGAGTGGGGTATTCGGATCGTGACCTTTGGTCATGCCGGTAATGGCAATATTCATGTCAATGTGCTGCCGGCGGCGGAATATGAATTCGCACGGGCGCGGGAGTGTGTGAGTGCGATTTTTAATACGGTCATTGAATTAGGCGGTACGCTGTCGGGTGAACATGGCGTGGGAATTGAGAAGCGCGAGTTTATTGATCGGGAATTGACGCCGGCCGCAGTGGAGATGATGTGGAAAATCAAACAGCAATTCGATCCGCGGGGGATTTTGAATTGCGGGAAGACGTTGCCAATGTCGGAAGAGATGCGGTAGAATCCTGACGCA # Right flank : CGCGAGTGGAGTATCAACGATTTTATTGAACGAATAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 52845-54054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000023.1 Thiospirillum jenense strain DSM 216 assembly_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 52845 37 100.0 37 ..................................... TATGAACTGCAAATCCTCAGCATCCCAGCCAATCTCT 52919 37 100.0 37 ..................................... ACATCAATGATTTAATGACAGTGACCGCGACAGGCAG 52993 37 100.0 36 ..................................... ACGCTCATCAAATCGGAAAACTCCGTGCACAGATTG 53066 37 100.0 37 ..................................... TTGCAAAAAAGGTGAGTTAATCCAATTGGCACTCGAT 53140 37 100.0 37 ..................................... ACTCCGAAATAACCAAACTCGAATTGGAAATTCGGTT 53214 37 100.0 36 ..................................... GAGCTAACTCTATTATTTCGCCTTGATTGCGGCAGT 53287 37 100.0 35 ..................................... CGCGGCGTGTATTGGTGCGCCCCGGGTGGCGACAA 53359 37 100.0 37 ..................................... ACTGCCGTCACGGCACACGGAACTCGCGTTGGAATGG 53433 37 100.0 35 ..................................... AATAGGATCAATAAATGAGTGAGTTTAGAACGTCA 53505 37 100.0 37 ..................................... CTCGGGTTACAGATGGCGACACCGTGACCATCACCAC 53579 37 100.0 37 ..................................... AACAATACACTTTTCCAACTTCAAAAGTGGTTTTGAC 53653 37 100.0 36 ..................................... TCATCGTTTTGATATTCATGTGGCGTGTGGATTTCA 53726 37 100.0 36 ..................................... GGGAGCCGCCCAAGTGCGAAGGCACATGTCCTGCAT 53799 37 100.0 37 ..................................... TCTGTGATGTCTTGGGGGTGTCAGCGGGGGTCTCGGG 53873 37 100.0 37 ..................................... TTCACTTTTAGAACATCTTCCGAAAGTGAACAAACCT 53947 37 100.0 34 ..................................... TATAGCCGTGCAATCGCCGTGTTTTGCGGTCGCA 54018 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 100.0 36 GTTGCAACCCATTATCCATTACAACAAGGATTGAAAC # Left flank : GCCGGTGACGCGGGGGTTTGTAGCGTATGTGCGGGATGGGAATCAGTTATTAGAAGTTGCAATTACTGACCAGTTGGTGGCGAAGGCACATCAATTCATTCATGCTATTTTTTTATTATTGAAGACGGGGCGGGTGCCGGCGCGAACGGGGTCAAAAATGCGCTGTGAGGATTGTTGTTATCGGAATATTTGTGTTTAGGGGCGATCGTGCAGGAAACTGTTGCTATCGTCGGCGAACGGGTGTAAAGTCGCAGTCAGTCAGCGGGGTGTCACGGTGGTATGGCTGCCAAAGTGTAAAATTTGCTGACAGAAAATTATTTTGGCAGCGTGGCTGAAGTGCTGTAAATGATTGTTTTTAGTGATAAAAAAAGCACTTTCAAACGTCAAAATTTGGGTTAAAACATGCTGTTTTTCGCAAAATTTCGGTCGAAAATGCCAAAAAGGAGGTCGGAAAATTTTTTGTATTTAGCTGAATTTTCTAGGTTTTCACCAAAAATGCG # Right flank : ATCAATTCCCGCAAATATACGGGGTCCGGATTGTAGGTTGCAACCCATTATCCATTACAACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCATTATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000057.1 Thiospirillum jenense strain DSM 216 assembly_contig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1 37 100.0 35 ..................................... TGGGATTGGAATTGGAATTACGCGGTTATTTGTGT 73 37 100.0 30 ..................................... CCGTCAGGCCCGTGGCTTTGTATGTGACAG 140 36 78.4 0 ...................-.....T.AA..CACT.. | C [175] ========== ====== ====== ====== ===================================== =================================== ================== 3 37 92.8 33 GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Left flank : | # Right flank : CACCCCGCGCAGCGCATTTAATAACACACCCACCGTCGTGCCATTATGCAACACCGCGCTGGCTAATGGTGATAAATGACCGCTGACCGCGCCCGCTAATAACGCAGTATTGACACCGACGGCAGCGCGGAAATTAAAACGAATTAACGCCTGCGTTTTAATAGCGATGTCATACGCATCAGCAATCGCGTCTAACCGATCATCCAATAAAACAATATCGGCCGTCGCCCGCGCAATTTCCGCCCCGCGTGGCATCGCAATGCCCACTGTCGCCGCCGTCAGCGCCGGCCCATCATTCACCCCGTCACCGACAAACGCCACCCGCGCCCCAGTCGCCTGCAACTGCGCAATCACGGCCGCCTTATCCTCCGGCGTGACCTCAGCGTGAATCTCATCAAATCCCAACTGCTCACCCAGCGCCAGCGCCACGCGCCAGCGATCACCCGTCAACAGCACCAGTCGCCGCACACCCAACGCCCGCAACCGCGTCAAGGTCGCCG # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 4847-719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000059.1 Thiospirillum jenense strain DSM 216 assembly_contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4846 37 100.0 37 ..................................... GCCATCAGCGCGACTGCGCCTAGGTTGCCCATGTCTT 4772 37 100.0 35 ..................................... CTTGGCACATCCCATCTGTCAGCCAATAAATTAGA 4700 37 100.0 37 ..................................... CGGTACGAGGCACTAACAGCTGACGCCGATGTCTATA 4626 37 100.0 34 ..................................... CAGCCATCAGCTTCATAATATAGAAGCAAGTGTT 4555 37 100.0 35 ..................................... CTTGCACGGCGCGGCGTGACCACGGATTATTTCTG 4483 37 100.0 35 ..................................... CCGCGTCATAGCTCGCCATCGGGCGGCCGTGTTGA 4411 37 100.0 37 ..................................... TGGGATCACTCAAGGTGCGTTGTTTCGTGGTATCAGC 4337 37 100.0 38 ..................................... TTGGTCAGACTTTTAGTCCGGCACGACGTTTAGCAATT 4262 37 100.0 36 ..................................... CTGCACACCACGTCCATTGGTGGGTGACGCGACCGA 4189 37 100.0 35 ..................................... TAGACAGCGCTATCTATGGGAGAGATGTAATACCG 4117 37 100.0 36 ..................................... TGTTCAACAAACTCAACGTTGTTTTCAATACGAACA 4044 37 100.0 34 ..................................... TCAATGTATAGCAGTCAGGTTGTAACGCCATTGC 3973 37 100.0 37 ..................................... GTCGTAATGAGTTCCAATACAGCGCCTTCATCCGCCC 3899 37 100.0 35 ..................................... TTTGGTTGTCCTATCCTTCCCAACGTGAGCGTCGT 3827 37 100.0 36 ..................................... TCACCTGTATTGCGCTTTACATTGCTTGACGTTGTA 3754 37 100.0 36 ..................................... GCCGTTATAAAAGCGTCAAACAGCGGGTTTTGAATG 3681 37 100.0 36 ..................................... ATGATAATCCGTCTCTGTGGCGTCCACGCTTTACTG 3608 37 100.0 35 ..................................... TCCGCTAGTGCGGTTGTTTTATTATCGTTCCGTAT 3536 37 100.0 36 ..................................... GTAAAATCCGCATCCGCTAGTGCGGATGTTTTATTA 3463 37 100.0 36 ..................................... AACCGCGTAACGGCAAGTCATTTAGCGTTCAAGAAT 3390 37 100.0 37 ..................................... ACGTACCATTCGAGCCGGTGTAAAAGCATTCAACACC 3316 37 100.0 37 ..................................... TCAGATAGCTTGAATTAAAGATTGTATTAATGCCTGC 3242 37 100.0 37 ..................................... CAGTACCATCTTGGACGAATCCCTGATGTTCCGAATT 3168 37 100.0 35 ..................................... ATGGCAGTCGGGAGTGCAGGAATACAATACCCGTT 3096 37 100.0 35 ..................................... ATCGCTTCGTGATGAGATCGACAAGCTCGGCATGG 3024 37 100.0 36 ..................................... ATCATTAGCCAATAAAAAAGCCCGTGCTACTAACAC 2951 37 100.0 36 ..................................... AAAACCGTAGCCGAGTCAGCGTGGGCAATTGAAAAC 2878 37 100.0 37 ..................................... AAACATAAGGCGCGATCAATGAGTGGCTACCCGGACA 2804 37 100.0 38 ..................................... GCCTTGATCGTTGCCTCCGAATACGCCGCTGTAAATAA 2729 37 100.0 37 ..................................... CATCAGGCAGCGACTTCCTAGGGCGCTACCTATAACG 2655 37 100.0 36 ..................................... CTGGTGCCGTGGCGACTGGCGTGGCGACTGGCGCGG 2582 37 100.0 37 ..................................... AGTTTAATGTCGCAGAGTCCGGTTGGAAGCCAACTGG 2508 37 100.0 37 ..................................... ATTGCGTATTTAATAATAAAACGCGAGACAGCCAATC 2434 37 100.0 36 ..................................... GCAATAGCGCTAATAAATGCCGAAGACGGCATTCTG 2361 37 100.0 36 ..................................... TAAAAATCTCCGTGCCGTTGCCGGCGTTAAAAAGAA 2288 37 100.0 35 ..................................... TGGCGGGCGTGGCGACTGGCGCCGTGGCGGGCGTG 2216 37 100.0 37 ..................................... TCATGTCTATATTGTTCTAAATACCAGTATTACAAGT 2142 37 100.0 35 ..................................... CCGAAACGACGAAACCCGAGACCGACCGCTCGGAC 2070 37 100.0 36 ..................................... GAAGAGTAAGAGTAAGATAGCAGTGCCGGCCCACTT 1997 37 100.0 38 ..................................... ACAAACCAATAATTAACGTGATGATCGCTAATTTCATC 1922 37 100.0 35 ..................................... GCAATCGCCGTGTTTTGAGGGCGCAGTTTGCTAAT 1850 37 100.0 37 ..................................... GGCTTGAGCGCTATTTGCGCGAAAGCTCTCTCTCTCT 1776 37 100.0 35 ..................................... CTCCCATCCAATGCGGCGGCGCGCATTCAAAATTG 1704 37 100.0 34 ..................................... GCATTGCCCTAACAACGTGACACAGTAGATCAGG 1633 37 100.0 36 ..................................... TTAAATCAACACGACGTGCCAACCGTAGTAATTGAC 1560 37 100.0 36 ..................................... CGGACAGAATTGGGCAACCGCGCAATAATCAACGCA 1487 37 100.0 36 ..................................... GATTGCAAATGGCAATAGATCACCCGGACTATTTGC 1414 37 100.0 37 ..................................... TAGAGTAGTCGACTTAATTGATCCATACTGTAAAACT 1340 37 100.0 36 ..................................... AGAAATTCAGCGGCACTTGCGGCGTGATGATGTCAA 1267 37 100.0 35 ..................................... TGCCGTTTGGCCAGCCGCGGCCGCGATGTCAGCAT 1195 37 100.0 35 ..................................... AAGAATTCGCCTTCTGATAACGACGCACCAATCAG 1123 37 100.0 36 ..................................... AAGATTGGATCAACGCCTGGAGCATGTCGAGAGCAT 1050 37 100.0 37 ..................................... TGTACGTTAGTGCAACGATGGAAAACGGAGTTATAAG 976 37 100.0 37 ..................................... TCCACCTTCTGTAGGTATCACGATTTCCGTGATACCC 902 37 100.0 36 ..................................... GCCTAAGAACGATTCAATCGTATTTAGCAGCGCAAG 829 37 100.0 37 ..................................... AAGCCTATGGACTGTCGGCCACATTTGCGCGGTTGGC 755 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 57 37 100.0 36 GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Left flank : AGGCCCGTGGCTTTGTATGTGACA # Right flank : TGATGAATGACATTCTCAGAGCCAGAGTAGCTGTATGGATTTTAAATCACATACCACGTCAAATAAAATTTGAGTTTTGGTTTTTAATTTATGAAAAAAACTTTTTTATCCAGAAGAAATTTTATTAAATATACTGGATTATCAATTTTTATATTTGCAATCTTCAATCAAATACCATATGTTAAATCCGAAGATTTAGCAATCGTAACAACCAAAGAAGAACTAGAAAAAGCTGTTAATGAAAGACATAAAAGAATAATTGTAAAAGGTGAGTTAGCCAACGACGTTAAAACGTCATATAAAATTAAAAGCGCATCTAAAGCTGCTATAGCAGCACTAATCACTGCTTTAACAGCGGTGGCGGCTGCCGCTTTCTTTACTGGTGGGTTATCACTTGCTGCCCTAGTGCCTATTGCAGCTGCAACAGGTATAGAAATAGCTGTAATAACAGCAATCGTTGCTATAGGTCTAACTCTTGTTTTAGCGATTACAAATAATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 3692-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000062.1 Thiospirillum jenense strain DSM 216 assembly_contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3691 37 100.0 37 ..................................... ACAGCAGGTGGTGCAAAATGCGCGTCCATTTCCTCTT 3617 37 100.0 35 ..................................... ATGCGGTGCGCGATATGAGCATTAAAGAGTTCGCT 3545 37 100.0 36 ..................................... CCACGCAGTGATAGACCGAACACCGCCGCGGGTGCG 3472 37 100.0 32 ..................................... GATAGGTCTGTCATTAGGTGCTTTGACAGTTG 3403 37 100.0 34 ..................................... TCGGTTGACGTCTCCCGCAACAGTGTCGGGCTAT 3332 37 100.0 34 ..................................... TGCGCAAATAGAGTATGCGCGTATTCGTGATATA 3261 37 100.0 37 ..................................... TTTCAACTGGCACTGGGTTAGGCGTGGTGGCAACAGT 3187 37 100.0 37 ..................................... AAGGGGATTGTTAATAAAACGGAGTTACTGCTAATGC 3113 37 100.0 38 ..................................... AGCGGGCTATTGCTATGAACTTGGGCGGTGGGTGCAAT 3038 37 100.0 37 ..................................... AATGACTGACTTTCCGTTGGTTGGTTGTTAAAGCGCG 2964 37 100.0 37 ..................................... TTACAAACCGGACCCGGCCTGACCAGACCTCGGCAAA 2890 37 100.0 35 ..................................... GTCGTTTCGTACATTTCCTGATCCTCGTTTGATGT 2818 37 100.0 37 ..................................... AATTAAAACCCAACCCAGCGCCACGCGCTAGACCAAA 2744 37 100.0 38 ..................................... ACATCATCACACCTTACTGTGATTAATAATAATACTTG 2669 37 100.0 35 ..................................... CCAGTATCGGGATCGACGGTACCGGCTGGTTTAGT 2597 37 100.0 35 ..................................... CCGACTTGTATCAGCATCTGCCACCTAATGTCAGG 2525 37 100.0 37 ..................................... GTGATTTTGATAGGGTATGGCTCAATCGCCTTGTTGA 2451 37 100.0 38 ..................................... GTTTTATGCGGGAACATGTAAAAGGGTTTTATAGGTTT 2376 37 100.0 37 ..................................... TTGAGGCGGTCAAACACAGTGGCGCACAAGGCGGCGG 2302 37 100.0 33 ..................................... GTAAGCCGACTTACCGTCAAGCGAAGGGAGTGG 2232 37 100.0 38 ..................................... TCCAAATCCAATTTCTGACTGAACACTCATACGCCAGC 2157 37 100.0 38 ..................................... CTGTTTTGCACAGACCCTAACCGCCGCGCCCGCCACAG 2082 37 100.0 37 ..................................... CCCAACGCACTGCCTATAACGCGGCGGGCTGGCGACA 2008 37 100.0 37 ..................................... GGCGGCTTAAACCGCAATATGAGCGGCGCTCGGCAAT 1934 37 100.0 37 ..................................... ACGCCGATTGTCGCGGCGTATTTTCATGCCAAGCAAT 1860 37 100.0 37 ..................................... ACCCATAAGTCATCATCGCCATCATCGCCGTCATGTT 1786 37 100.0 37 ..................................... TCATCTAAAAACTGGACTTTCGGATTTTTTGGAATCT 1712 37 100.0 37 ..................................... CGGGCATTTCTATTGCGGGCATTTCAACAATCATGTC 1638 37 100.0 35 ..................................... AATGATGTGTTTATTCGCAATGTACAAATGGCTAT 1566 37 100.0 37 ..................................... AAACCAGTCGTTCGGCAATACGAATCGCAGCAAGCGC 1492 37 100.0 37 ..................................... TTTCCTCTGCGCCAGCAATAATACGGGCAATTTCACT 1418 37 100.0 38 ..................................... ATCATTTCCTCCAGCAAGTTTCCTAAAACCATGGCAAT 1343 37 100.0 35 ..................................... ATTCTCCGTTTTAAGCCATTAAAGGGTTATTGGTT 1271 37 100.0 39 ..................................... GCTTTCTGTAATGTCGAGTTTTTAATGTTTTTTGCAATC 1195 37 100.0 37 ..................................... GGAATAGCTTATCACTTCTGTTTACGCGTTGCAAGCA 1121 37 100.0 35 ..................................... ATCAGTGCCGCACACGGAACTGGAAAAACTCAGTC 1049 37 100.0 33 ..................................... AATGATTCTGAGTAGTACTCGCGGGAAGTGCCG 979 37 100.0 38 ..................................... CCTGTCACGACTGTGCGCGACACTCTGTACAGTGACGC 904 37 100.0 37 ..................................... GTGGAGAGCTCGATGATACAGCAGCTCGATATGCACT 830 37 100.0 36 ..................................... ATAACCGCACTCAACGATGGAATAGACAATCTTTCT 757 37 100.0 37 ..................................... CCCGAACCGCTGAATACATCTGCAATAATGATGCGGT 683 37 100.0 36 ..................................... CGTGCCGTGCGCAAATACCACAATTGCGGGCGCGTT 610 37 100.0 37 ..................................... CTAATACGCAATATCGTATTAGCAAGCGAGCGCAATA 536 37 100.0 35 ..................................... CGCAAATTCATCAGGTGTGAATGGCGTTATTTCCT 464 37 100.0 37 ..................................... TTTTCTCCGTCCGTTCACACGGATGGCGAAAACGCAG 390 37 100.0 37 ..................................... GTCCTGACTGCCAGCCTGGCTCTGACTGGCACAGTGT 316 37 100.0 37 ..................................... TAATAGGAAAGTCTCTCATAGTCCCCGAGCGGGACTA 242 37 100.0 35 ..................................... GATTGTGGGCGGATGAAATGCCGATCCCGCCGTGG 170 37 100.0 37 ..................................... GCGAGCGAGCGCAATAATCGCAGCATCAATGTTGGGT 96 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 50 37 100.0 36 GTTGCAACCCATTATCCATTACAACAAGGATTGAAAC # Left flank : AAACTATAATACGCTAACCTCGCGCATATGACATTTACCA # Right flank : CGCGAGCGAGCGCAATAATCGCAGCATCAATGTTGGGTGTTGCAACCCATTATCCATTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCATTATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 45659-45138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCQ010000006.1 Thiospirillum jenense strain DSM 216 assembly_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 45658 36 100.0 36 .................................... GGGTAGAGTGTCTAATTCATGGGCTACTGCTATAGG 45586 36 100.0 31 .................................... TTCCGAATCGGCAGGTACTCCCGATCATTAA 45519 36 100.0 34 .................................... CCTTCAAACCAATCTTTAACGTATACATTTATAG 45449 36 100.0 34 .................................... CCTTCAACCACCAACGCGGTGGCTTTACGTTCTG 45379 36 97.2 29 ............C....................... TGTATATTATTTTAAATCCTTTTTATTTG 45314 36 100.0 36 .................................... TTCACAAACACGATCGCACGTTTTGTTGTTTTCACA 45242 36 100.0 33 .................................... ACCGACTGCTAGTGTTAATCCATCTGTTGATAA 45173 36 83.3 0 ......................T.......AATA.A | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 97.6 33 GTACGAACTGAGACCCGCTTTTAAGGGGATTGAGAC # Left flank : GACGGCGTGGCGAATAACCGCTGATCCGAATGAACAGCAATTGATTGGCGTGATGGAATTATTAGCCACTGAACAATTAGTTTGGGTGGTGCGCGAAACGGATGAGGCGTTATTAGTCGGGATTGATGCGGTGATTAAACAGTGGTCAACCGATGGGACGTTGCGGCGGTTAATTGCGCGGTGGTTGCCGGCGCAGGTGCAGGTGCAATAAAAAAGGGCGAGTGGTGGTGCGCGACGTGACAAATTGTGTGATCTGTGTCACACTTGATAGCGTCGCGCAGATCAATAACGATGCGTCTGCGGCGGCAATGAAGCTAAGTTTTTCGACTTTTGCGATTTGGCAGTTTGTAACACGCAACCGCGTTTGTAAGTGCTTGATTTGTAAAGGGTCGGATAGTGTCCAAAAGTGTTACTGTAGGCTAACTTTTTTCCGTGATCTTATACGCACAAAAACTGCTTCGTAACGCTCTGATTTGTCAGGAGAAAAAAATCACGCCGCT # Right flank : AACCCGCCGAATTAGGCGGGTTTTTTGTGTGAATAAAAACTGATTGCGGTAATCACCCGCCGCGGTTTTTATTGAGAATTGAGCGTCATAACCATCATGCACTGGCGGGCAATTGATTATTCCCACACTCCAGCGTAAGAACCCCAAGCGATTGCGCTGATTTTAACAATCCTATTATGTAGAACTATAAAGTATTGGTAGGACTAGCGCAGATCATACCCAATTCAAATCCCACGCCGCTTGATGCAAGGTGATTGCCCGATGGATATAAAAACACTGGTGATTGTCGGCATCGTCATGGCACTGGCGGGCGCTTTAAGCATGGCAACGCTTTTTCTAACTCGTCGTGTTTATCTCGGATTCGGGTATTGGACATTTGGCACCCTATGTCGAATGCTGGGTTCACTATTATTTCTATTCCGCGACCAATTATCACCCTGGCTCACTATCATCTTCGCCAATACCCTATTGTTCGCAGACATCGTATTGATTGGACACGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAACTGAGACCCGCTTTTAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //