Array 1 53915-60749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVP010000007.1 Campylobacter concisus isolate 2010-88823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 53915 30 100.0 38 .............................. GAAGTTGTGGCTTAACTGCCACTTGTACGAGTACTTGA 53983 30 100.0 34 .............................. TAACTCACAAAGCCCCTAAATAACGCACTTTACT 54047 30 100.0 37 .............................. TCAAATGAAAGCTTAACGTTGGTTAAAAACGTGTATG 54114 30 100.0 36 .............................. TAGCCAACAATGGCGAACTATACAATCTCAAACAAA 54180 30 100.0 39 .............................. TTTTCGCTATTTCTCTACACACTAATAAAAAGCTCAAGC 54249 30 100.0 37 .............................. CAACTCACAAAGCCCCTAAATAACGCACTTTACTAAC 54316 30 100.0 36 .............................. GGGCTCTTGACGATATGGCAAAGCTAGCGCTTCTTA 54382 30 100.0 36 .............................. TTCTTTTCTATTAACTCTTTATCATTTAAATTACTA 54448 30 100.0 35 .............................. CAGCAGGGACTTGTGCCAGATTTGGAGACGAGTGG 54513 30 100.0 34 .............................. TAGATACCTGTTATGCTCCCTTTCGTTCTGTCTA 54577 30 100.0 36 .............................. ACGACGCTAGAGCAGCTAAAGCACCAACTGAAAGGG 54643 30 100.0 38 .............................. TAATCCTCTATCTCATCTTCTGTGAGGTTCTCGCTAGC 54711 30 100.0 36 .............................. TAGCTTCTACTGGTGTATTTGAGATTGGCGATAAGA 54777 30 100.0 36 .............................. CTCTTTCAGCCTGCCTTTGTATGCTAGAGTTCATCA 54843 30 100.0 38 .............................. TTTACATTTGAGAAATTTCCAGGATCAAACCCATATCT 54911 30 100.0 36 .............................. TCAAAATAGAAGTAAAAGAGGCTAAGACGTCCTAAC 54977 30 100.0 34 .............................. GTGTAGTCCTCTAACTCTTCGCCCCCTTCTTCAT 55041 30 100.0 37 .............................. GTGTCCTAACATGCCTTTTACTACTTTTGCGACATCT 55108 30 100.0 36 .............................. CATTTGATACGCCGCGCGCTGTTGCTTTTAGCTTGC 55174 30 100.0 36 .............................. ACTCATCAAAAGCAGAATACAAAGATCGACGACTAC 55240 30 100.0 34 .............................. GATGATATGGCTCAAATGGCGTTGCTCCGTATAG 55304 30 100.0 35 .............................. CATAATATAAACCATGAACTAAAAACAGATAAACA 55369 30 100.0 38 .............................. GTTGTAAATTTAAGTGTTAGTAGTATTGAGTTTTTGAA 55437 30 100.0 39 .............................. TTTAAAGGATATTTCAAGAATGCCACAAGCAGCAATATA 55506 30 100.0 36 .............................. ACAAAAGAGAAAGAGCGCATATATTCCCTTTGGCTA 55572 30 100.0 35 .............................. GTGATATCAAAAAAAGTTTAGATGAGACTATTTCA 55637 30 100.0 37 .............................. TCTTAACTTCGTCTTGATAAATAAAGTAGTATTCACC 55704 30 100.0 37 .............................. CGACATCACAATTTTTTATAATATCTAAAACCCCAGA 55771 30 100.0 39 .............................. TTAACATCTTCGACAACGTAATTTTTAAGATCAATTCGC 55840 30 96.7 36 ....A......................... ACTGCTGGGGCTATTCAGTCTGAAAGTGTGCGTAAA 55906 30 100.0 36 .............................. TGCTGAGAAGTTGGGCTTTGTCTGGGCTGGTATTGT 55972 30 100.0 35 .............................. CTCAGGCACCCGCGCGAGAACTCCCTAGAGTGCTT 56037 30 100.0 39 .............................. CATCCACCAAGAGCCAAGTACTATTTTGTTTATGTTGCC 56106 30 96.7 36 ....A......................... AATTTATATGGCTGTGTATTTGTTCTTGATGAGTGT 56172 30 96.7 35 ....A......................... GTCAAATGGCTAATGCTTTTAAAGTTGGTGGTGCT 56237 30 96.7 37 ....A......................... TTGAATTTATCCACTCAGTGCCACGCCAAGAAACGAA 56304 30 96.7 36 ....A......................... CCAGTGGTCGTTTTGGATATGAGCTAAATTGTCTGC 56370 30 96.7 34 ....A......................... AAAGTAACAAATGATGCTAAATATTGTGCTTTAG 56434 30 96.7 36 ....A......................... CTCAAGAAGAAATAGCGTATTTGGATGAAAAGTGTG 56500 30 96.7 35 ....A......................... GAAAAAATAAAAGAAAAAGCAAACAATGGAAAACT 56565 30 96.7 36 ....A......................... GTGAGGGGGGTGGTAAAAGCGGCTGATGGTAGCTTG 56631 30 96.7 37 ....A......................... GCTGGTGTTGCGGCTGTTTCTGCATTGTCAAGTAATG 56698 30 96.7 35 ....A......................... AAAATGGTGTATGGCTTCAATCTAAGCAAGACTTA 56763 30 96.7 37 ....A......................... AGTTTTGGTGACACGCTAGAAAATAACAACGGCAATA 56830 30 96.7 34 ....A......................... CAAGCGAGCAAGAGAAAAACGGCGAGTTAAACGG 56894 30 96.7 36 ....A......................... ATTTTAGAAAATTGCAAATTGAGCTTAATAAGCTAG 56960 30 96.7 36 ....A......................... AAAGATTAATTCCTATCAATGAAGAAAACGAGATAA 57026 30 96.7 36 ....A......................... AATAAAATAAATAGAAATATACAAATGGAAAAGAAA 57092 30 96.7 37 ....A......................... TATAACTACGAAAGAACCGCATTTAGACGGAACTTGT 57159 30 96.7 34 ....A......................... ACGCCAACAGAGGCGACTACGCACAGCTTATTTT 57223 30 96.7 36 ....A......................... ACTGATGCAGTAGAAACTCTTTTAAATAAAATAGAA 57289 30 100.0 37 .............................. AAGAAGTTGGCGAGGGGTCGATAAAAGACACACTAGT 57356 30 100.0 34 .............................. ACGCCAACAGAGGCGACTACGCACAGCTTATTTT 57420 30 96.7 35 ....A......................... CATAACCAAATCGTGCTTAGCGTTTTTGCTAAAAC 57485 30 100.0 34 .............................. GTCCAATGCCGTCAATAAATAAATTTCCGCCTGT 57549 30 100.0 34 .............................. TAACAATTCAAGCCTTGATATGTAAAGCCAAATT 57613 30 100.0 38 .............................. TCACACATATTGAGTGCGGCGACGGACAAAACGACTAC 57681 30 100.0 37 .............................. CTTTCTATTTTACAAAAGAGAACCGCTTTAGCCTCGC 57748 30 100.0 37 .............................. ATAAGATAATTACTATAATTCTCTCATAAAGGTTAAG 57815 30 100.0 35 .............................. CCCACTTCAAGCAGTGTGCAACATCATAAACGCAA 57880 30 100.0 35 .............................. ACAAAATAAGCAGGCAAAGAATTTTTAAGAAAAAT 57945 30 100.0 37 .............................. TTGTTGAGCCAGTAAAGCACGCCAACGACGAAGCTTA 58012 30 100.0 39 .............................. CGAATAAGATCAGCAACCTAGAAAGTGAAGATAGGGCGC 58081 30 100.0 37 .............................. AAAGAGCCGTGAAATACTACGGTGAAAAACTAGACCA 58148 30 100.0 34 .............................. TAACAATTCAAGCCTTGATATGTAAAGCCAAATT 58212 30 100.0 38 .............................. AAGGGTTGTACCAGCTTCGTTCTGCTCCATCCTTAGCC 58280 30 100.0 37 .............................. TCTTGCATTTGTTTAAAAAAGCTATCCACTGCGTCCG 58347 30 100.0 35 .............................. AATGCGACGTCCGCTATTTACGGAACGCATTACGA 58412 30 100.0 38 .............................. TCAATAAAAGGAGAACGGCTATGAGCGAGATAGTTTCA 58480 30 100.0 35 .............................. CCGAAATAAATCCCGGCTATATCTTGCTCTTCATC 58545 30 100.0 37 .............................. TAAGAAAGTCTGGGACGTTTCTATTGAAAATAAGAAC 58612 30 100.0 38 .............................. TTGAGTAGTATTTTTTCAATGCAAGATCGCACTCTTTA 58680 30 100.0 36 .............................. TATTTATCTCATTACGCAAGACTTAACTTTAGTCAA 58746 30 100.0 38 .............................. AAGGGTTGTACCAGCTTCGTTCTGCTCCATCCTTAGCC 58814 30 100.0 37 .............................. TCTTGCATTTGTTTAAAAAAGCTATCCACTGCGTCCG 58881 30 100.0 35 .............................. AATGCGACGTCCGCTATTTACGGAACGCATTACGA 58946 30 100.0 36 .............................. GTTTCTACACCAGTCCCACCGCCACCGCCAGAACCA 59012 30 100.0 35 .............................. CAAAAGTAAAAGCTAAAGCAAAAAACAAAACATAA 59077 30 100.0 34 .............................. TGAGTTTTAAAATGTGTTTGAATGAGCTTTTTGA 59141 30 100.0 34 .............................. TTTGTCAGAATTTCTCTTTATTTCAAACTCAATC 59205 30 100.0 38 .............................. AGAATATATTAAGAGGACGCTTCAGCGACGCTCAAACC 59273 30 100.0 36 .............................. AATCCTTTTAGACTTTGATTAACGACTGGGATTAGC 59339 30 100.0 37 .............................. GCTCGACCTCATAGCCAAGCGCCGCCATCGCATCTAA 59406 30 100.0 36 .............................. TGAGAGGATTTGTTTAAATGAAATTTATGAGCTGGA 59472 30 100.0 35 .............................. TTGTCAAATTTTGGAAGCTCGATAAAATCACAAGG 59537 30 100.0 36 .............................. AACTAAGTGACGCCATAAGTTTTGATAGCGTCTTAA 59603 30 100.0 34 .............................. GCAAGACCAAGCCTAAAATCAAAAACAAAAAAAG 59667 30 100.0 35 .............................. CTCAAGCATTGAAGACGATTATATTGATGAAAATA 59732 30 100.0 34 .............................. AGAGCGTGTGGGTGATAAATCCATTTAAGAGGGT 59796 30 100.0 35 .............................. GTGGCATTTCTTGGACGTTGTGTTTAATATACACT 59861 30 100.0 36 .............................. GAAGTTGCGGATTAACTCCGCTAGTATAAAGTCTTA 59927 30 100.0 38 .............................. CTATCATAATGCACCCCCTTAAAATCCGTATTTCTCTA 59995 30 100.0 38 .............................. CTTTCAACGTGTGCGAGGCAAAGCTCAATAACATCACT 60063 30 96.7 36 ...G.......................... AAATTCCATATAGTGAAAAGTCGCACTCCAGATTAT 60129 30 96.7 35 ...G.......................... GCATATGCAGATCCGCTAAATGCAACTAAGACTAA 60194 30 96.7 35 ...G.......................... GACCACGACGTAAGTTTTGAAAACGCTATCGGCAA 60259 30 100.0 36 .............................. AGTATCTTTTTTCAGTAGAGCAAGACAGCGAAATAA 60325 30 100.0 37 .............................. TAGGTAGCTATATCACTTCTAAGAGTTGAAGGGCTTA 60392 30 96.7 33 ................C............. TTACCGATAATGAGTGCGTGGCGTATATAGTTT 60455 30 100.0 37 .............................. TGATCTTTTAAACCTATAAGACGAACTTCATCGATCA 60522 30 96.7 37 ...............A.............. GTGTAAGGCAACTCATCTATTGCGTTTTGAAGCATAC 60589 30 100.0 36 .............................. AAATTCCATATAGTGAAAAGTCGCACTCCAGATTAT 60655 30 96.7 35 ...G.......................... TCTTCGTGATCAATATATTTCAGCCCCTTTTAATC 60720 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 104 30 99.2 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGTTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGTGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGTGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTTTTTGGTGCA # Right flank : CTTTAAAGTGACATACTTTTTAATCTCATCTTTACAAGATTAGATGGAGTTTTAAATCCTAAAAAAAGATGTTCTTAAGTAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGATATATTAAATTATTAACATTAGTATGTATATTTTAAAATATTTCTAAAGAAGCTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAACAATACTTCAAAAGTGAAGTATCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //