Array 1 148747-152436 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAON01000002.1 Agitococcus lubricus strain DSM 5822 Ga0183448_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148747 28 100.0 32 ............................ GTCCCTATCCGTCATATTGCCCACGTAGTCAC 148807 28 100.0 32 ............................ ATCAGGCGCGACGGCAGTTTGCGGCGTTGATT 148867 28 100.0 32 ............................ ATATCCTCAATGGCATCACCGATTGTATAAGT 148927 28 100.0 32 ............................ AGGGCAAACCGCAACGGATATGACAAACTTTT 148987 28 100.0 32 ............................ TAAGCCATACCCTGCTAATCCTGCGCCACCAA 149047 28 100.0 32 ............................ ATTGTTTCAGGCTTTGAAAAAGATTGCCAACC 149107 28 100.0 32 ............................ TCGATAAAATCGGCCACTTCTAAAACGTCATC 149167 28 100.0 32 ............................ TTAAAATATCTTCAACGTCTTTTTTGTCTTGT 149227 28 100.0 32 ............................ CATGAAATCAAATGAGCCAAACTTGCATTTGC 149287 28 100.0 32 ............................ TTGAATAGCCTAATTTAACAAGCGAATCATAA 149347 28 100.0 32 ............................ CATACCAAGCAAACAGCTTGCAACTCTACTCC 149407 28 100.0 32 ............................ ATATTGAATATTGCCTGGATTATTATTTCTAA 149467 28 100.0 32 ............................ ACACTAGCCCCTTTATTACATTGGCGCGTATG 149527 28 100.0 32 ............................ TTGACGAACACCTGTAATCATTAAGATGTTGC 149587 28 100.0 32 ............................ ATGCGGTTGTTACGATGGCGATTAAATTACAT 149647 28 100.0 32 ............................ ATAACTTTTGAGCTTCTGATTGTTTACCTTTT 149707 28 100.0 32 ............................ AGTTGACGGCCTGTCATTAGGACTTCCATCCC 149767 28 100.0 32 ............................ TATTTGTGGCGATGAATTATTAACAATAATCT 149827 28 100.0 32 ............................ AACACTAGATGATGCGCGTTTTAAGGCTGCTT 149887 28 100.0 32 ............................ GCCATAAAGCAAACAAGGCCAAAAAAAATAAC 149947 28 100.0 32 ............................ TCAAGGCGCATCTTTTCAGGCAACCACCCGAC 150007 28 100.0 32 ............................ AAGAACAAGGCGCATTATTTAACCGAGTAAAA 150067 28 100.0 32 ............................ TTTCTGTGGTGTGCAAATTGACTCCCCGTTTA 150127 28 100.0 32 ............................ TTTTTGTTGTTAGTAATATTTTTTAAACTATG 150187 28 100.0 32 ............................ AACTGAGCAATTTGGCGACTGGTCAACCGCAA 150247 28 100.0 32 ............................ AATGATTGTCGGCGGTATGGCATTAGCTATCA 150307 28 100.0 32 ............................ TTGACCACTCGACCATGCGGGCAATACCATGT 150367 28 100.0 32 ............................ TCAATGGCGAGCTTTGTTGCGACGTTTGGCGG 150427 28 100.0 32 ............................ GCGTGGCCGCCATTACGTCGGTTACATCCAAG 150487 28 100.0 32 ............................ ATATGCCTGCAAGACCATCTTTATATTCAGAT 150547 28 100.0 32 ............................ AAAATATTACCGAAACTTGTTAAAAAGTTATC 150607 28 100.0 32 ............................ GCCTATACTTGGATTACCTTCTTCACCAAAGC 150667 28 100.0 32 ............................ TTCCTGTTGTTGTTAAGCAAATTACCAATCAA 150727 28 100.0 32 ............................ GCGCCGACTCGGGTGAACAACCGCATGGGCTT 150787 28 100.0 32 ............................ GATGTTTTCAAAACTATTGAGCAGGCTGGACA 150847 28 100.0 32 ............................ AAAACATCCATATCCTTGCACAGGCGCGGCCA 150907 28 100.0 32 ............................ CGTAGAATCTAAAGCGTTGGAATTTTCTTCCC 150967 28 100.0 32 ............................ AGTTTAATAGACTCAGATTTCATCGAGCGACA 151027 28 100.0 32 ............................ TGCTAAATCATTCACCACAACATCACTACCTA 151087 28 100.0 32 ............................ ATTAAAATGACCAAGCAGCAACGAATTGATGA 151147 28 100.0 32 ............................ ACCAAGAATTGTTCCATTCTCAGTTATTGTTT 151207 28 100.0 33 ............................ ATTTAACTGTCCATCAACCATGATTTTTTTAGC 151268 28 100.0 32 ............................ AACGATTTATGGCCGTGGACAACATGGGTACG 151328 28 100.0 32 ............................ AGCCACACCTGCGCCACCCAACATCGCTTTAC 151388 28 100.0 32 ............................ TCTTAGCGTGACTTTTTGGCCATCCTTTGATT 151448 28 100.0 32 ............................ AAATGCCGACTTAATCGTATTGGTCTGAATGG 151508 28 100.0 32 ............................ ACTCAAGCAAATGATACTTAGTGATGTCTTGC 151568 28 100.0 33 ............................ AAGCCAAGAAAATGAATAAACACGAAACTTGCA 151629 28 100.0 32 ............................ TAATATGATTAACATCATCATCGGTTAATTTT 151689 28 100.0 32 ............................ TTCAAGTTTTTGCCATAATTCATTTCTAGCAT 151749 28 100.0 32 ............................ TTAACTCGTCCATAGTTAAATTCTTGTAGTGC 151809 28 100.0 32 ............................ CTCAATATCCCACACCAACAGCCGACTAGAGT 151869 28 100.0 32 ............................ TTATTGAAGTGCTATTGCTTTTAACCAGTCAG 151929 28 100.0 32 ............................ TGGCCAGCCGCCCGAAGTAGCCGACATGGTAC 151989 28 100.0 32 ............................ GTCACCGATTCCTCATTGTCGTTGGATGCCCT 152049 28 100.0 32 ............................ GTCAATGATGCGACGGTTAGGTCTTTGAAGTC 152109 28 100.0 32 ............................ CGCCAATCGGCAAACCTGATAATACGCCATTT 152169 28 100.0 32 ............................ CAAAAGATTGCAGAAGCTATGCCGTCTGTAGC 152229 28 100.0 32 ............................ AACTATCAACCAGCACGGGCAAATTTTACCCC 152289 28 100.0 32 ............................ AACTGCCGTTGCAAACTGGTCGGCTAAAGTAC 152349 28 100.0 32 ............................ TACGGTAAAGTCTCACAACCTATTTGTGATAT 152409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGAGCTAGAACAACTCAATCTTAATCAATGGTTGGCACGGTTGAGCGATTATGTGCATATCACTACCCCACGAGAAACGCCTAATAATATTAGCTATGCAATTTATAGTCGTGCCGTACCTAAAGACAGTGTTGAAAAACGTATTTTGCATCAGGCACAACGGCGCAACATTAGCATTACAGAGGCAGCGACTCACTTTAAAGACCATGTTTATCCGCCACTGATTGAGCCGTTTATTAGCTTAAAAAGTTTGAGTGGTCAGCATATCTTTAAGTTACATATTAAAAAAACGCTCACCGATGAGGCAAGCATGGGTAAATTTGGCACATACGGACTTAGCAAAACTGTCACTGTACCCGAATTTTAACCCAAGTTTTTTAATGCTCTTTAACAATATAATAAAATCAATAAGTTACAACAGTGACAATTTTATTGGGTCAAACCGATAAAAAATGGACTAAGTTATTGTTGTAACTTAATTTTTTGTGTTAATTTTACA # Right flank : ATCCAGCGTTTAAGCCTATTAATGACCCTCAAGAGTCATCACCATTTACATCACTCACCTGTCGCCTCACGATTACCTACAGACCCCAAACATTGACTTTTCTGTCGCATAAATTGTCAGCAAAGCGAATGATTCTCACGCTCGCTATTGTCAATATCAGGCTATCAGTGACTATTTCAGTCCCAATTTTAGACCCAAACACCCGATGAGATTATGGCAAACGTATCATTCGTTTAGCACTAACTCTCACAGGGTATCGTTCAACAACAAGAGGGGAAAAACAATGACGACATTTATGGGGCAAGCGCAAGGCGTAGGCTTAGCCATTCTGAATCAAATTGCCAGCAGCGACTGGCCAGACAAATTAAAGCTGCGTAAACCCATCGAAAAAATACTTTATCAAGGCAGCAAAACGGGCTTTAAGGTGATGACCAAAGTCAGCCGCCAATTTGCGAGTTCGGGTAAATCTAGCAATCAAGCCACACGTTTAGTGTCGAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4650-4269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAON01000047.1 Agitococcus lubricus strain DSM 5822 Ga0183448_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 4649 36 100.0 34 .................................... AGATGCTTTAAAAGGATTTAATGACTTAAGAAAA 4579 36 97.2 35 .....................T.............. GTTTCGCCAAAAATGACAATCGGTGGCATTAAAAA 4508 36 100.0 32 .................................... AACACCCGAAAACGGGCAGTCTTGTATGCTAC 4440 36 100.0 34 .................................... GTGTACCACACAAGTATGACGCAATAGCTTCCTC 4370 36 97.2 30 .....................T.............. GCTAGTTTGACGGCATAATTCACCATACAC 4304 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 99.1 33 ATTAGAACTCTTCCCTGATTACTAAGGGATTAAGAC # Left flank : TACTGAATCAGAACGTCAAAACATCATCGGTAGGGTAGTATCAATCAGAATATTTTAAGTTATCGGAATTTTCGGCGGTTTGGGCTTATAAACCC # Right flank : CTCACTGGCACAAAGGCCAGTGACTGTCTTAAATTATAAATCTTTTTTGATTACCCCCTTAATTTGTATAAATTGAGCATGCTCAATTGTTGCTTAACGCCCTTTAATGATTTGTTCTAGGTTCTCTAGCACCCATTCTGGGCACTCCCTAGAACTTGCTTTTGACGAATCAGCCGCCCACGCTTGCACGGTTCTAATACTGTATTTACGTTTGGTTTGCTGTTCTAGAAGTTGTTTAACGGCAAACGTATCTAAATTAGCGTTAACCATTAAACTACGTAGCCTTTGTTTGTTTTCGCTATCCATCAACTTAACTATCCTTGAGCAGTTGTTGTAATAACGCTTGTAATTGTTGCGCGGCAATCGGCAGCTCTATGTCATAACTCGCCTTACGCGATTTAACCGCAACAATCAATTTTTTGCCTTGTTGTAGCAATTGTACGCTGTCCGCTTTGATAGTTTTTTTATCGACTTGAGCATGCTCAATTTTGCCTTTGTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAACTCTTCCCTGATTACTAAGGGATTAAGAC # Alternate repeat : ATTAGAACTCTTCCCTGATTATTAAGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //