Array 1 58730-57131 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYU01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O446 NODE_1_length_424725_cov_79.676417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58729 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58668 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 58607 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 58546 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 58485 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58423 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 58362 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 58301 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58240 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58179 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 58118 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 58057 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 57996 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 57935 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 57874 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 57812 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57709 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57648 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57587 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57526 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57465 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57404 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57343 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57282 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57221 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57160 29 96.6 0 A............................ | A [57133] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76599-74862 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYU01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O446 NODE_1_length_424725_cov_79.676417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76598 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 76537 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 76476 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 76415 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 76354 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 76293 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 76232 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 76171 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 76110 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 76049 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 75988 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75927 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75866 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75805 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75744 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75683 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75622 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 75561 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 75500 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 75439 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 75378 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 75317 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 75255 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 75194 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 75133 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 75072 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 75011 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74950 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74889 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //