Array 1 293469-293271 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXN01000010.1 Chitinophaga tropicalis strain ysch24 NODE_10_length_293614_cov_25.327919, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 293468 46 100.0 30 .............................................. CAGCGAGCTGATACCTGCTATCACTATCCG 293392 46 100.0 30 .............................................. TAATAGCACTACGGGATATATCAGCCGTCT 293316 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 100.0 30 GTTGTGAATGATCTAAGCTACGGAATAATTGAAAGCAAATCACAAC # Left flank : AAACTGTTCTAAGGCCTTTTTCTTGAGGCCGTCGTAATCAAATTGATCATTCTTGCTCATAAAAAGAAACTTGTGTTAAAGGTCAGGAAATTATTTTAACCTTTGACACAGTTCATTTTACAGTCTCCTTGATACATTTATATTC # Right flank : TCACCTCAATGAGTTTGTTTCTCACTTTAACAGCTATCCAGACGCCAGATACTCTCCCTCTGGATTTTTTTAACATTCGTAGTCTTAGATAATCTTCAAACAAATGTTGAAATATTTTCAGCAAATAATGTTATATTTAGTATAACCAATATATAGCTTCATGGCTACCCAAAATACTCCGTTCCCCTTCATCGGTAAGCTTGGTAACCTCATCGGATATAGACGCAACAAAAAATACTTCCTGCGCAGCATGCCCGAAATAGTTCGGCAAACACGGGCCACCCGCCGCGCTGCCCAACGCTTTGGCATGGCCAGCAAAAAAGGAGCGCTCATTCGCAGCGCTTTCTACGGCAAGCTGGATGTCCGTGCTGACACCAGCCATATCAATCGGCTAACCAAAGCACTTATTCCCTCTGCCGGGAATAACACAAAAAACATAATCGGTTTCCGGTTCAACAAGCATACCGGGACCGATCGGTTCTTTGCCCTGGCGCCCCGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATGATCTAAGCTACGGAATAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 2006-145 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXN01000037.1 Chitinophaga tropicalis strain ysch24 NODE_37_length_4430_cov_24.482686, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2005 46 100.0 28 .............................................. TCTATCAGTTCCTTATTACACTCCACCA 1931 46 100.0 30 .............................................. TCGCCCTGTAACATAGCCTCGTACCGCTCT 1855 46 100.0 30 .............................................. TATCTCCCGTACCTCCTATATCACCCCACA 1779 46 100.0 30 .............................................. TACGCCGCAACGCGGCCTTAATCGGTGCCA 1703 46 100.0 30 .............................................. CGCTCCTGCTATGCCTACATTCTCGTTGAA 1627 46 100.0 29 .............................................. TATTCAAGGCATTTGTAAGCGTCGGTGCT 1552 46 100.0 28 .............................................. AATATGGGGTTATCTGAACTTAACCCCT 1478 46 100.0 30 .............................................. ATGCGTACTATGTCATACACACGGCGACCC 1402 46 100.0 30 .............................................. CAGCAACGAAGGAAAACCAAAAAACTGATT 1326 46 100.0 30 .............................................. AAGAGCGGTTATTATAGCGAAACACTTATC 1250 46 100.0 29 .............................................. TACCGCCAATGTAGGATATATGTATACTG 1175 46 100.0 30 .............................................. CTGCTACGGCTGCTGCCCTGGTTGGATATA 1099 46 100.0 30 .............................................. TGAGTTCGACAATGTGACCGCCATCACCGA 1023 46 100.0 30 .............................................. CGTGAGGCATATATACTGTACTAGTACACT 947 46 100.0 29 .............................................. AAGATTCAATAATAGTAGTTGTTTTACCA 872 46 100.0 30 .............................................. TTGACTAAGGAATTTATTTACAAATTAATT 796 46 100.0 30 .............................................. TGAGTTCGACAATGTGACCGCCATCACCGA 720 46 100.0 29 .............................................. GTACACAATTAATGGCAGGCCTTAACAAC 645 46 100.0 30 .............................................. GTGCCACTATGTGGGATGTATGCAGGTTTG 569 46 100.0 30 .............................................. TAAGATCACCACTATAATACGCCTGACCAA 493 46 100.0 30 .............................................. CCCAGGGAACTTGTCTCCACGCGCGGCGGA 417 46 100.0 30 .............................................. TATCCACATTGCATAAGAGTTCGAATGCTT 341 46 100.0 30 .............................................. TGAGCGTGGTGTATTTTGGTCGAAAATATA 265 46 100.0 29 .............................................. ATTAGCGTGTGCAGTCCGTCGCTACCCCA 190 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 25 46 100.0 30 GTTGTGAATGATCTAAGCTACGGAATAATTGAAAGCAAATCACAAC # Left flank : AGATACTCTATCCCAAATTAAAAATGTAGAATATGTATTGCAGATTGTTAATCCTAATATCTCATCTATGTTCGATCGACTTAATGCTTATCGTATTATGTGGGTATTAGTCTTTTTTGATTTACCCACTGAAACCAAGCGTGACCGGAGAAACTATGCCTTATTTAGAAAAAAGATCTTGGCCGACGGATTTCAGATGTTTCAATTTAGCATGTATGTCCGTCATTGCAGTAGTAAGGAGAACTCAGACGTACATTTAAAAAGAGTCAAGAGATTTCTCCCCCCGAAAGGACATATAGGGATAATGTGTGTTACAGATAAACAATTTGGTATGATGGAGATCTTTAGAGGAAAGGAATCCGTTAATCCGCCAGTTACAGCTCAGCAGTTAGAATTGTTCTAAATCACCTTTTTAGGATTGAAATTCTGTAGCTTAGGGTCAATTTTTATTTCTAAAAATTGACCCTAATTCAATACAGATAAGCGTTTTGACGGAATCC # Right flank : CACGTGACGCACTTGATACGGGTGTGTAAAATAAACTGTGTCAATAAAACTTAAGTACTTAACAGGCCTCGTTACTGAATGATATTTTTTCTGATGCAGCGGGGCATTGATCCCAAAGGTCCAAAAAATATCATTCAGTAACGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATGATCTAAGCTACGGAATAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //