Array 1 1271-975 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUJB01000015.1 Bacillus cereus strain AFS048015 AFS048015_82_D11_Contig11_140604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1270 31 100.0 34 ............................... AGATACACCACCTAGTTTCTCTGTCGAGACCTTG 1205 31 100.0 36 ............................... AATCAATACAGCTAAAAGCTTCTCGTTTGTTTAATT 1138 31 100.0 34 ............................... CGAAAAAACATGCTGCTACAAGTACCATTCCAAT 1073 31 83.9 37 ......C.A......AT.............G ATGTACTCTTTCGATAATCACTAATCTTCACAATCAC 1005 31 71.0 0 ......C.A......AT......ACC...AG | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 91.0 36 GTTGAATACTAACATTAGATGTTTTTAAATT # Left flank : AGTTATTATCAATTTAAACTATTTAACAAACACAGGAAGTACAATGCAAGCCACTGGTGATTATGTGACCGTTCATGATGACTGGGGTTCAGTCACGACCAAAGTAAGATTTTCGGTCTTCTACTGTGAAGGGGCAACAACAGATGGAACAGAGTTTGGTTACGCATTTGTAACCGATGGGATTGCAAGAGCAAATAAAATGTTTGATGCAGTCGGGAAGAATTCAAATGCTCCTCAACTCCAAAAAGTTGAAGAAAGACGAAAATTCATTTAATTACACAAGAAAAGCCATCGAAACTTAGTTTTGGTGGTTTTTTTATGGTCGTTACTTGTAAATTTAATTAAAAGATGAACTTATTTTTTACCAGGCTGTTATGGGAAAATACCTTAATAATAAGATTTGAGAAGAATTAAAAATAACTGGTAAAAATAGAGCCTAAGAATTGATATAACAAAGATTCTTTTGTATTATGGAAATAGGAAATGTTGATTTATTCGGC # Right flank : ACGTTAACCAATATGGTTCAACGTCTTTTTTTATATACTTTTTTAAACTTTTTCTCTATTCTTCTCATAATCCATTATTATATGTGGGGGTATTCTTAACTTTACTAGGTTTTTCCCGATACCTTATGGGTAACAAAACAAAGAAAAAATCTTGTAAAAACAACATAAATGTTTTATACAATCACTGCAATAATGGGTTTTCAAGACCTATTTTATCCTTTCATTTTTTGAGAAAGGAGGTTTATATGAATAATTTAGTGAAAAAATTGCTCGGATTGGGTGTAATTAAAGCGGCTGTCATGCTTATTATCTTATCGGGTTCTATATTATTTACTATTTATATATTAATTAGTAACTACGGTTATTGTACATTACCGTTCCAGCAAGAATGTTGGAATCCAGATAAGGTATACTTCGATGACCCAATACGAGATGAGGAAATCTTATCCGCCAGTCGTCACATGGATGAGGTACGAAAAAACTTAGGAACAAAGGGTGTA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATACTAACATTAGATGTTTTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 52676-51352 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUJB01000015.1 Bacillus cereus strain AFS048015 AFS048015_82_D11_Contig11_140604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================== ================== 52675 30 100.0 36 .............................. GTGTTAAACTCTTTTCCATCGAATGCGAATACATAA 52609 30 100.0 37 .............................. TAATACATAAAGTATAATGCCGGAGAACCTGACCTAT 52542 30 100.0 34 .............................. GTAATATATTTTCTAGTAGCAGCAGCTTCAATTA 52478 30 100.0 34 .............................. AACACCCAATCCACATCATATCTTTTAGCTGTAT 52414 30 90.0 36 .......GG.......G............. TTTTGAAGGACTAGTTCTTTATTAGTTTCATCTTTT 52348 30 86.7 34 ......A.G.G.....G............. TAGGTGAATTTGTCAACCTTCACAGGTTTCCCGT 52284 30 100.0 35 .............................. ACATAAGGTGCTTAGAATACTTTTGTCCCGATTTT 52219 30 83.3 37 T.....T..G......G.T........... ATTGTCGGAGTGGCTTTTTTATTTAACCAAACTCGAA 52152 30 90.0 26 ........G...T................A GTTAATGCATCTGGTACGTCATCGTG Deletion [52097] 52096 30 86.7 36 ........GG......G............A ATGGGGATGTATGGAACATACGATTTCGAAGAAATG 52030 30 90.0 36 .A..G...........G............. GGCTGTTTTTGTTCACACTGAAATCTTATAGAATAA 51964 30 93.3 35 ........G.......C............. TGAAGCTCCGGAGGAGTTTAGCAACAGCATATAGG 51899 30 86.7 35 A..............GG.T........... GAAATACGTAAAACTGAAGTTAAACCAATCTCGAA 51834 30 86.7 34 .....GT.G......G.............. AAACCAAAAATGCAATGTTTTTTAAAGGCGATTT 51770 30 93.3 36 ......T.C..................... ATCCTACAACATTTTTCAGTATTTTAGTAGAAATAC 51704 30 86.7 37 ......T.G...T...A............. ACGCTTCGCAAACTGCTTTGCGGGAGCGCCGTAAACT 51637 30 93.3 36 ......T........G.............. AGCGTAGCTGTAATTCTTACTCCTACAATGGATTGC 51571 30 86.7 34 ......T.C.G.....A............. TGCTCAGTTGTCATATATCCGAGTCTCGGAAATT 51507 30 90.0 94 ..C.............A............A AGACGTTGAACAATATGGTTCAACGTCTTTTTCTATCCATTTAAATTGCATTATCTACGTTTCCCGCTATAATAGGTAAAATTTTGTAACAAGG T [51480] 51382 30 60.0 0 CGGTGTT..A..T..GA....A........ | T [51364] ========== ====== ====== ====== ============================== ============================================================================================== ================== 20 30 90.2 38 GTTGAACAATAACATATGATGTTTTTAAAT # Left flank : GAGTGTACTCCATTTGCAGGGACAGATAAGAACAAAAACCAACTTAAGGAAGAGTTTACAAAAATGGGGAACGGAAGTGACTTAGGTACATCTTGGGCTCATAAAGCGGGTAGACTGATGATTATATTTTCAGTTGGAGTTTCGTATGCTGTGCAAGTGGTTTCTATGATTACGATTGTATATAGTTCATATTTATATACCACTAGTGATGGGGATTTAAGAAAGGTAAGTCAAGCCAAGGCGTATATTATGTATGCGTTCGGTGGCATGTTTATCGCATCGTTCGCCCTGGTTATTTCTAAAATGTTGGGTTCGGCATTGTAAAACTAGATATTTAATATATCTAGTTTTTTACCAGGCTGTTATGAGGAAATGCCTTAATAATAAGGTTTTAGAAGGATTATAGAAAATATAAAATAGCTGGTAAAAATAGCGCTTAAAAGTTGATATAACAAAGTTTTTTATGTATGATGAAAACAGAAAAGGTTGATTTATTCGGA # Right flank : CCAGATGCTCCTGAATACCAGGACAATATAGAATTATTACTGGATGATGCAATTCTATTATCTTTAGAAATCCCATTAAAAACATATATACAAGTTACTCCGGAAAAACAAAGCGATTACAGTCAAGATTTCGCGATGAAAATGGTTAATTATGATAAGAAAAACGCGGTTTTTACATATCCGTACACAGATGAAAGATTAAAACCACGATATAATCGAGTTATTTTCGCAAAATCCGGGGATATCGATAGAGATTTATTGCCTTTTAAAGGATACTTTAACTACTTGAATTTTGATTTAAAAGAATTGTTATTCGGGATAGTTCAACACAGATTTCGCTACGACCATGTAGATTTAAAGGAAGGGGACGAGCGTTTCTGGAATCACGCACGACAGTGGGAAAAGAAAGAAGCGCTAATGTGGGATTTTACAAAAGAGGAATTCATTGATATCCCCTTTGATATAAATCAAAAACACCCGAATACACAGTCGTTTAAAGA # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATATGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [33-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 135967-136357 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUJB01000036.1 Bacillus cereus strain AFS048015 AFS048015_82_D11_Contig24_140604, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================== ================== 135967 22 72.7 37 GAT...TTT............. ATTGTTCAAGGGTTTTATACACAATTTAATTAAAAAA 136026 22 90.9 31 C...............C..... ATTGTTCAACTGTTGCCTGAGCGTTGAAAGA AA [136029] 136081 21 72.7 40 AA..C.-....T...A...... AGTATTCAACTATTAATATCGCAATTAATAAAAGCAATAT A [136085] 136145 22 90.9 35 A.............A....... AATTTTCAACTTATTTTTATCATGTAAGTGGCTGA 136202 22 100.0 46 ...................... CTTATTCAACTATATCTGTTATGAAGTTGAACAATTAACTTTATCC 136270 22 86.4 44 GC.............A...... ACTATTCAATTGTCTGTAACTTCTTGCTTTTTTTTGCTGCATTA 136336 22 77.3 0 AA............TC.G.... | ========== ====== ====== ====== ====================== ============================================== ================== 7 22 84.4 39 TTATTTAAAAACATCTTATGTT # Left flank : GTGATAGTTGTTAATTCCTCAATCATCGGTGTTTTAATAACCTTTAGTTCTACAGCTAAAACTTGAAAATGATGATTTCCCTTTCTTAAGATGCGTTGCATTTTTTCGGCAAATGTTTGATTCGTAGTTCGAATACGGAACAAATAAACTCTTCCTTTTTTGTATGTCCCATCTGATTCTATTGGATATAGATTGTTAAAAACATAATGTTTGTATTTACGAGATGTATGTAAATCACAAAGCCATTTATCTTCTTCCATGCAACAATTCAAGAAAGAACCGATGTGCTGCCGTGATTCCGAATGATGCATGTCTTGTTGTAAAAAGGCTGTGACACTTAATTCATGTACGAGCATCTTTTTTCTCCTTCGTTAGTATTTTATTTAAATGTAATTACTTTGTAATCACTTCGTTTCCTTATATTACAAATTTTTAGTTGTATTTGCAAGTGCTTTCGAATAGAAGATAAAAAAATCCCGTTTCTTATTTGTAAGAAACGG # Right flank : TATTATTCAACACCAGACAATTCAATATTTTCTTTTTTTATCATACACAAAAATCCTTTTCGCATCAATCATTTTATATTTTTAACACTTCTTCTAAAACCTTGATATCTTTGAAGGAAGCGTTGCAGAAAAGGCTTAAACTATGAGTTTTTATAAAAAACAGGTTATATATCATCTATATAACCTGTTTTTTTGCTTTCAATGAAACATTAAAATTTATACAAAAACATTTAAAATTAAAATAAGAATTAACGCTACCACTGATAAAATCGTTTCTAATGCAGTCCATGTAAGTAATGTTTCTTTAACTGTCATGCCAAAGTATTCTTTGATTAACCAGAAACCAGAATCATTTACGTGAGAAAGAATTAGAGAACCCGCACCTGTTGCAAGAACAAGTAATTCTAAGTTTACCCCAGGCATTGTTGCTGCGATTGGAGCAACAATGCCTGCCGCTGTCATCATAGATACAGTAGCAGAACCCGTTGCAACACGAATCA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.22, 5:-1.5, 6:-0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTATTTAAAAACATCTTATGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.36%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [10-10] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //