Array 1 117500-117863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028187.1 Campylobacter coli strain CFSAN054106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 117500 36 100.0 29 .................................... TTGTATTTTTGCAAGGAAATTTTAAAGAA 117565 36 100.0 30 .................................... AATCATCTTCTCGATTTCATCAATAAGAAT 117631 36 100.0 30 .................................... ACATTTGGATTTTTGCATTGTTCAATTAGA 117697 36 100.0 29 .................................... AGCAAAATTAAATACATAAAAATAACCGA 117762 36 91.7 30 ......T....C..........C............. ACTACATCATAGAACTTGTTTATACAAAAG 117828 36 86.1 0 ......T....C..........C..G.........A | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.3 30 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : GTGAGATCTGATTTATTTATAGATAAAAAAAACAAATTCCATGCAGTGCCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGTATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGTATGAAAGAGTCTATTATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACCTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGCGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAAAGCGCAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : ATAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCGCAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATTGTTGTAATTTTGGCAATTTTAGAATCACTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTCCCCTCCAATTGTCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGAATATTAGCAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTTACC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 919398-918900 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028187.1 Campylobacter coli strain CFSAN054106 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 919397 36 97.2 30 T................................... TATAATCCTTTTTCAATGTTTAATTATTGA 919331 36 100.0 30 .................................... TCCTTTTTGTTTTGTTGATAAAAGTGTATA 919265 36 100.0 30 .................................... AGAAGCCGAACTAAACGAGCAAAAACAATT 919199 36 100.0 30 .................................... AGAAACTATATTAGCAGGTATAAATAACCT 919133 36 100.0 30 .................................... ACATTTTGAAAGATACATAAATGAAAATTC 919067 36 100.0 30 .................................... TCAATAAAAAGATACATTATATACTGGTTT 919001 36 100.0 30 .................................... GCAATAGAAACAGTTAGAAACAAAGAAACG 918935 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTAGTACCAAAAGAATGTGAAATGTTAGAAAATGAAAGCTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGT # Right flank : AGATATTTACCAGATAATGAAAATTTAGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //