Array 1 24172-23080 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_OADH01000022.1 Neisseria meningitidis strain Neisseria meningitidis isolate R916, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     24171	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA	
     24105	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT	
     24039	    36	 100.0	    30	....................................	GGTCAGATTATAATAACGTTGAGCGCGTGT	
     23973	    36	 100.0	    30	....................................	TATCATGATGAGCATATTTATGAAGAGGTA	
     23907	    36	 100.0	    30	....................................	CGATTTACCACCCATAAAACCACCTCAAAA	
     23841	    36	 100.0	    30	....................................	TAATTTGCGTTTCGTGTCGCTCATAAACCC	
     23775	    36	 100.0	    30	....................................	ATTTATATTATTTTTGATTTTGATTTTTTT	
     23709	    36	 100.0	    30	....................................	CTGAAGCTGATGAACGAGCACGTTTTGTGG	
     23643	    36	 100.0	    30	....................................	CGTAGGGATGTGTGTTAAATCTACCGTTTT	
     23577	    36	 100.0	    30	....................................	CGCCCCCATGCTGATGGTGCGCCTCGCCGA	
     23511	    36	 100.0	    30	....................................	ACATCTTCGCCGACATAACCTGCTTCGGTC	
     23445	    36	 100.0	    30	....................................	CAGCTGGTTAGAGCACACGCTTGATAAGCG	
     23379	    36	 100.0	    30	....................................	CCGAACGGATCGGGATAAATAAAGTCATGC	
     23313	    36	 100.0	    30	....................................	ATACGCAACAGACTCATCAGAAAAATAAAT	
     23247	    36	 100.0	    30	....................................	TTTTCAACCACAACAAAGATGCCATTTTCT	
     23181	    36	 100.0	    30	....................................	TATTTTGACAATCTGTTGATTTCAACTGCT	
     23115	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//