Array 1 106044-107465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKL010000010.1 Listeria seeligeri strain FSL W9-0524 NODE_10_length_112869_cov_69.297938, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 106044 36 100.0 30 .................................... AAAATAGCGGGTTTTCCAGTTGCTGGATTA 106110 36 100.0 30 .................................... GCACCGCGAAATATGATTTTATTTCCGCGC 106176 36 100.0 30 .................................... AAATGAACAGAAGTATAATAAGCCCGCTTA 106242 36 100.0 30 .................................... GCTGATAAGTAGTTACGATTGAGCGAATAG 106308 36 100.0 30 .................................... TGAAATTACGTCCAGTTTTTCCGTCGCGCG 106374 36 100.0 30 .................................... CTAAAATATCGTTTCACGATTTACGACATT 106440 36 100.0 30 .................................... ATGTTGATAATGCGCACTTACTAGTGATGA 106506 36 100.0 30 .................................... AATTTCAAACTGTTCTCCTTCAACCACATC 106572 36 100.0 30 .................................... AAATGCTTTGGTTATCGCGAACATGGGGCC 106638 36 100.0 30 .................................... AGAGGACAAGCGTAAAGGAACAGCAAAGAG 106704 36 100.0 30 .................................... CAAACGAGGAAGCTATTGTTAAGTTCGACG 106770 36 100.0 30 .................................... CATTAGAAGAATCGGAATATACAAAAGCCA 106836 36 100.0 30 .................................... TTCATCGCCGCAAATTGCTCATCATTTATT 106902 36 100.0 30 .................................... TATTAAACTTGCTTTCAGACGGAACTTTTG 106968 36 100.0 30 .................................... ATAGACGATTAGAGAATCGGCAAACGAAAA 107034 36 100.0 30 .................................... AGTTGTAAAGGAATCAAAACGTTCTAAAGA 107100 36 100.0 30 .................................... TCTTAGAGCTAGACAAAACTTCCTTCCTGC 107166 36 100.0 30 .................................... CGGCAAATGCGTTAATCGGAACAGCGACAA 107232 36 100.0 30 .................................... CATATATGAGGTTCCCGTTCGGTGATTAAA 107298 36 100.0 30 .................................... CGGTAAAGGTATTGCTGATGAGATGGAGGT 107364 36 100.0 30 .................................... GATGTTTGGCCGCATTATCTAGTGCAAGTT 107430 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGAAGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACTGCATTCAAAATCGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATTTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGGGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 392916-392550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKL010000002.1 Listeria seeligeri strain FSL W9-0524 NODE_2_length_467341_cov_53.948149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 392915 37 100.0 29 ..................................... ACGAACAACAGATGAACAACAAACGATCA 392849 37 100.0 29 ..................................... AGCAGGGACGAAGACAGGTCGATACAGTT 392783 37 100.0 29 ..................................... GGCGCACAATATTTAGTGACAGATTCCAC 392717 37 97.3 29 T.................................... AATTGTTAAAGAAGTTAAAGACTGTAGTC 392651 37 100.0 29 ..................................... TACAACAGAGCGCATTTGATAGGGTTTCA 392585 36 81.1 0 A..................T........-.A.TG..T | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 96.4 29 CGTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : GCTGTTTTTTTAAGCTTTCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTCAGGACTATTTTCAGGAAAATAATATAAACTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGACATCTGAAACTTTTATTTTTTCTTGACTATTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATCAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGCGTTTTTATACTTATCCACATTAGA # Right flank : TCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGCTAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGAGAATCTATAAACCATTTTCCGGTTTCAATTTTAACCAACTCCAAATCTAACAATACTTGATTTTCGGTTTTCTTTTGATTGTCGACTTGAAAAGCAGACCAGGCTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTACAGTGATAAA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 202898-203445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKL010000001.1 Listeria seeligeri strain FSL W9-0524 NODE_1_length_602523_cov_57.042303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 202898 29 100.0 36 ............................. TCATGAAATGCGACTTCATAAATTATTTGACTGTGT 202963 29 100.0 37 ............................. ATGGTTATTGAAGCTGGTATACAGATATTAACCGCTT 203029 29 100.0 35 ............................. CGAGACTATCTAAGTGGCGGAGACTATGTAGTAAT 203093 29 100.0 36 ............................. ACTATCATTCAGAAGCAATTACTTCACAACGACCGT 203158 29 100.0 35 ............................. TCACTAATTCATATCGGCTTTCTAACTGCCAATAA 203222 29 100.0 36 ............................. CAATTTTCACGTGACGCTTCAGAAACTCGATTGATT 203287 29 100.0 35 ............................. TTGGGTCACCTGTGGATATGAATGTATGTTCTGCG 203351 29 100.0 37 ............................. ACTAGATGCGTTTGCCAGTATGAACTGGTTAAATCCG 203417 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAATAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCACTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAATAGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGCGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAGATTTGATAAAACAACTAATTGAGCAAAACAAACCGGTTTTCGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTCCACTGAACTATCATTTTTTCCAGAGCGAATAGATGTTTTTCACTGGCATCAAGAGACTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 208993-210374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKL010000001.1 Listeria seeligeri strain FSL W9-0524 NODE_1_length_602523_cov_57.042303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 208993 29 100.0 35 ............................. ATTTAAATTCTTGATAGAATGAATCAAACATCAAG 209057 29 100.0 34 ............................. ATGTTTCACGTAAATTACGAGGGTAGTTATTTAT 209120 29 100.0 37 ............................. TGCGTTTACGAAAAAGTCACGTAGATACTGCAGTAAT 209186 29 100.0 36 ............................. AGAAATTATTGTCATATAATAGCGGAACTTTGAACG 209251 29 100.0 36 ............................. GTGATTGTTTAAAATATATTACTCCATGTCCACCAT 209316 29 100.0 35 ............................. TGGAGTCCTCCGTCCGAGAACTCAATCTTACACCC 209380 29 100.0 37 ............................. CGTGTTGTCGTCAAACTCTTGTTGGTACATTGTAGTC 209446 29 100.0 35 ............................. AGGGACAGTTCGCGTTTACCGTCTTGAACAGCTTG 209510 29 100.0 34 ............................. GGAATAAAGGCAATGGCATCAGGTAAGGCATACA 209573 29 100.0 36 ............................. ATAGTCGATTCATCGAAATTGGATAGCATAGATTTT 209638 29 100.0 38 ............................. TCGACTAATGATGTGACTAAAGTAAGCGCTGCATCTAT 209705 29 100.0 34 ............................. CTACAGCTTTGCTGTAATAGCTTCTTACATTTTC 209768 29 100.0 37 ............................. TCGCTTAGAATTAATATCTCTTGCGGATTTGCTAGCG 209834 29 100.0 37 ............................. TTGATGGTCTTCCAGCGATTACGATTAGCTCGCCATT 209900 29 100.0 35 ............................. TTCATAGCATAGGCCGTATTCGTCTCTTCTATGAT 209964 29 100.0 35 ............................. GCGTTTGTGATAAGTTAGTATTTAATGTGTTTATT 210028 29 100.0 34 ............................. TGGCGTTGCGCTGGGTTGAATTAGAACGAGCTAT 210091 29 96.6 34 ................T............ TAAATAAGCCCGTGATAACGAGTACACCAACAAG 210154 29 96.6 36 ....A........................ CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC 210219 29 96.6 34 .......................A..... AAATTTATTCTGTAACAGCTAGCCAAGATAATCA 210282 29 96.6 34 .....................G....... GTAGTTGACCAATTAACGTTATTCCATCAATCAT 210345 29 82.8 0 A.C.......T.....A...........G | T [210370] ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.6 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCTAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGTTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCCTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GTCTTTCCATCACGCTAGTAATGCTACAAAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGATAGTAGCACTATAATAAATTTCCCAGTCAATAAAAAATTAAAAATCAAATTCTTTACTAGTTTAAGGTATAAATCTTTTTAACAAAAAGCGAAAAATTTCAATTAAGCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 218983-220364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKL010000001.1 Listeria seeligeri strain FSL W9-0524 NODE_1_length_602523_cov_57.042303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 218983 29 100.0 35 ............................. TTTCATATAAAGCCCATTTAATCTGCTGATAGACC 219047 29 100.0 36 ............................. CGCTTTTCAATAGAAAGATTAAAGTAAGCATCTGAA 219112 29 100.0 37 ............................. CTTTTTGTTTTTAAGCGAGGTGTTCCGCCTTTTGTTT 219178 29 100.0 36 ............................. GCTGTAGAGATAACCGTTTTAGTACTATCATTCAAT 219243 29 100.0 37 ............................. GAATTCACATTACAAGACTCGTTTAGAAAAAACGGAA 219309 29 100.0 36 ............................. AATATTGCCCCCGATGTGGCAAGAAGTTAGATTTCA 219374 29 100.0 35 ............................. ACCATTATCGAAGCGGGAATCCAGATATTGATGGC 219438 29 100.0 34 ............................. CTGCCCTTTTGCCGTCACTATATAAAAAACTTAC 219501 29 100.0 36 ............................. CAGTCAAGGAAGCAAGTGCATTCACCGATGTTGACC 219566 29 100.0 38 ............................. TTACGAATGACCTACCCCAATCCTGATTCAGGTCAGGA 219633 29 100.0 34 ............................. CTGGTATAAATACATTTTCATCTGTATCAATAAT 219696 29 100.0 34 ............................. ACAAGAAGTTTGTTAAGAAAATCTAGTTTGATGC 219759 29 100.0 35 ............................. CTATGCCTGCAGGGACAAGACCTATAGTTACTGAA 219823 29 100.0 35 ............................. CCCTCTATTCTTCTGTAAATTTAAATAGCTATTCC 219887 29 100.0 34 ............................. GATAAATCTGCTAAAGATATTGGTGAACACTTTG 219950 29 100.0 36 ............................. CCGTTTTCGAATCAAAATGAAATTATTGAGCATAGT 220015 29 100.0 35 ............................. CTTGTTAAGTTAATTGCGATAAACACATCAAATTG 220079 29 100.0 36 ............................. CCCTTTAAACCTGGCTCAGTCACATCAGTACGCATT 220144 29 100.0 34 ............................. ACCTTCATTTAATATGAATATCGAGATAGTGTTC 220207 29 100.0 37 ............................. AAATCTTTTGATACATCATGCCTAGAACGTCCACCCC 220273 29 93.1 34 ............C..........A..... AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT 220336 29 75.9 0 .......AC......CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.6 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGAACGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCGCCCACCCTTAAAGCCAATAATCTGTTTTAAGGATTTTTCATCTAAAAACCACACCACAATCCTCCCATTTTTTTTCATCCAGCGAAAACCGTTTTTGAAATATTTGTAACCGCTCGCATGGATTATACGCAGGAAGAGAGCTATTATTTATTAGATGCTAGGGAAGATGCAGTTGTTTATTTAGGTTTGAAGGATGGTGTGCGGGAAAGCGATTTAATTGGAGCACTTGAAGAAGCGCAAACCGGGGCAGTCAAGCTGGATGCAACACGTTGCGTGAATACTTTCCCAGAAAAAACACGCCCATTTCTTAATACCATCGGGGACTGTTCATTGTTCTGGCGCTGATTCGATGATTCTCGAAATAAGCTTATCTGCCTACATTTTTACATTTAAGCTGTGGGATTGGGGACGATTAGGCTTAGACGGCAAACCACGGCCAGTGCATATTGATCATGGAAAAAAAGTGATTAATTGGAACCGTTCTGAAAAATGGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //