Array 1 1269696-1271301 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTK01000001.1 Parabacteroides merdae strain NCTC13052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1269696 32 100.0 33 ................................ AATCTCGATCATTTGCCGACAAGATCGCCTATC 1269761 32 100.0 32 ................................ CACAGTGCCACCTTCCGAATCTGTCACATTGA 1269825 32 100.0 33 ................................ ATCTTTTACAGGGACTTCCAACCCAAACACAGG 1269890 32 100.0 33 ................................ CAAGACATTGCGACATTTCAAGTCTTGTCCCAT 1269955 32 100.0 32 ................................ TTGATTTTGCGAAACACATAAGAAGCATATAC 1270019 32 100.0 33 ................................ ATCTTTTCATCCTCATAGACACTCAAAGAAAGT 1270084 32 100.0 34 ................................ AAAATGTGACTCTCTTGCATTTGAGAAGATAGGA 1270150 32 100.0 34 ................................ ATCCTTTCGAGCACGAATGTAGGCAGAACCAATA 1270216 32 100.0 32 ................................ TTGCGAGAGCGCAGGAGTTTTTTCGCAATGCC 1270280 32 100.0 34 ................................ GCTGCGCTATCTCGCGTGTGGCGAGTACGGCTCT 1270346 32 100.0 33 ................................ CATGATTATCAATATTTTATATTATATTCAATC 1270411 32 100.0 33 ................................ AAGGTGCTGCTTATGCGAAGACTCTTGCCGAGA 1270476 32 100.0 32 ................................ TTACTTTCGCCGTCGAGAACAGTATTTGAAAA 1270540 32 100.0 35 ................................ CGTGCGTATGAGGCTATATATAACGCTTATATTCG 1270607 32 100.0 34 ................................ TGTGACGAGGAGAGCATAGTAATGGGTATTATGT 1270673 32 100.0 33 ................................ AAGGCGTCGTAACGAACATTAACATCAAAACGA 1270738 32 100.0 34 ................................ TCCTTCTTACGCTCAAATTGAGCTTAATTGGCTT 1270804 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 1270870 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 1270937 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 1271001 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 1271067 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 1271134 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 1271199 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 1271270 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 25 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1276982-1278791 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTK01000001.1 Parabacteroides merdae strain NCTC13052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1276982 32 100.0 32 ................................ CGTTGACATAAAAATAGAAGATTTGAAGTGAC 1277046 32 100.0 34 ................................ TGATATTTGGACGTCAGAACCCATACTCCGCTTT 1277112 32 100.0 34 ................................ ATCCGGCACTTCAATACCAAGAATACGCTTAATA 1277178 32 100.0 33 ................................ TTAATAACCGTCGCTTCGATCTCGAATGCGAAG 1277243 32 100.0 33 ................................ AAGAACACAGTCTGACTTTTATAAGGTTCAGAT 1277308 32 100.0 36 ................................ AGATAGGTACGGCTCAAATGATAATGAAGGAACATG 1277376 32 100.0 33 ................................ GGTGTTATTTTGAACGATAACATACAAATGAAA 1277441 32 100.0 33 ................................ AAATCCTGTTTCTTTATCTGACACACAGGCGAC 1277506 32 100.0 35 ................................ TATTGGAGCCGGTAGACGCCAAAAGCGCGCCATTG 1277573 32 100.0 34 ................................ AATACTATACGGATGAGTTTTGTGACCCCTTTAA 1277639 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 1277704 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 1277771 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 1277837 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 1277902 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 1277968 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 1278035 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 1278102 32 100.0 33 ................................ CATAGCGGTAGGAGTAGCCATAATAGGGCCTGC 1278167 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 1278232 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 1278299 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 1278365 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 1278431 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 1278496 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 1278564 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 1278628 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 1278694 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 1278760 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.4 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : AGAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //