Array 1 37285-44854 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRJ01000005.1 Azospirillum baldaniorum strain Vi22 NODE_5_length_125803_cov_28.042323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 37285 32 100.0 32 ................................ AGTTCGCTGGGCCGTGGGCTGCGCGCCCGCAT 37349 32 100.0 34 ................................ TGGTAACCCGGCTTCGACATAACACGCTCTAGGT 37415 32 100.0 33 ................................ GGACGGAGAACCGATAGGATTGTTGCCGCGCAT 37480 32 100.0 34 ................................ GTCCCGAAGCTGTGCAAGCTCCTACTCCAGCGGC 37546 32 100.0 33 ................................ GGCCTCCTGGCCCTGCGCAATGATGACGGCGTG 37611 32 100.0 35 ................................ TCGTATCCCTCGGCGAAGTAGTGCTGAATCCAGGC 37678 32 100.0 35 ................................ AATGCCGGCGATTTCTGGGTCAAGAACAACGGCTC 37745 32 100.0 35 ................................ ACCGGGGCCGCGGTCGCCTGCGGGGCCTTCTGAAC 37812 32 100.0 33 ................................ GGTCGAGACACGCGAGCGGTTCAGTGCGCCAGC 37877 32 100.0 33 ................................ AGCTTCTCTTCGTCGGTCAGGATGGACATCGGC 37942 32 100.0 32 ................................ GTAGACCTACGAGGGGGGTCTCGCGCGAGCGA 38006 32 100.0 36 ................................ TCCTGCGGCAACGCCAGCGCGGCCTTGAAGGAGGCC 38074 32 100.0 35 ................................ AGTACCAGGAGGCGATCGCCGACACCCAGGCCGTC 38141 32 100.0 32 ................................ ATATGAGCAACGCCAGTTGGGCCTTGCAGGTC 38205 32 100.0 34 ................................ ACGAGTGGGTGATCCGGGCCGCGTCGGCGCGGAA 38271 32 100.0 33 ................................ CCGCAGAGCAGGACCGCCCGCCGGCAGGACACC 38336 32 100.0 34 ................................ CCTCAGAAATGAGTTCGCCGGTAGAAAAGGGCAG 38402 32 100.0 32 ................................ TATGGGTTGGCGACCGCGCCTCCGGGTGCCTG 38466 32 100.0 34 ................................ CTGCGGGTGACGGTCAAAACCAGCGGCACCGATA 38532 32 100.0 33 ................................ ACTCGCACCCGGCACGTGGTTTCACTCGCACCC 38597 32 100.0 33 ................................ AGCGATCCGGCCGATGCGGATGGCGACGTGTAT 38662 32 100.0 34 ................................ CGTCCCGGTGCCCTGATCTTCTCTCGCAAGCGGC 38728 32 100.0 32 ................................ GTCTCGCCGGAAATCCTCAAGCATGGGGCCGG 38792 32 100.0 33 ................................ CAAATCGAAGGGATCATCGATTCCCTGGCGCGC 38857 32 100.0 33 ................................ GCGGAAAGCGCGGTGGGTAACAGCATGGGCCTG 38922 32 100.0 32 ................................ GTTCCGGACCATTGGCGGAGCGGAGCGCGAAC 38986 32 100.0 33 ................................ ATCAAGCTGGATGCCGGCACGCTCGACGCGGCG 39051 32 100.0 32 ................................ GTCTTCCTGTCCACCGCTGGGGTGCTGGTGGG 39115 32 100.0 34 ................................ TCTCGCAAGCGGCCGGTGGAGCACTTCGAGCAAC 39181 32 100.0 33 ................................ GACCTGTCGCGCCGCCTGACGATGGGGCAGCGC 39246 32 100.0 33 ................................ AAGGAATGGGGGATCAACCTGACGGTGATGCGC 39311 32 100.0 33 ................................ GTCTCGCCGGAAATCCTCAAGCATGGGGCCGGG 39376 32 100.0 34 ................................ ACGCTGATGGACGACGCGGCGGCGAGAACGCGCG 39442 32 100.0 33 ................................ GTTTTGGTCCCGGAAGTGACCTTGTCGCGCCGC 39507 32 100.0 34 ................................ AGGCCGCAGCCGCGCAGCAGGCGATCCTCGCGCG 39573 32 100.0 34 ................................ GATTCCGACGCACGGAAGGTTACCAAGACCGGCT 39639 32 100.0 34 ................................ GCTTGAACGGCACCACCACCAGCGCGGCCTGATA 39705 32 100.0 33 ................................ AATCCGCCGGGACGGCCAACCAACCCGGCGAGC 39770 32 100.0 34 ................................ AAGTTCAGCGAGGCGACCTTCGATCTGGCCGCGA 39836 32 100.0 33 ................................ GTCGCCCCGACGGCCGCCGGCCAGGTCCTGCGC 39901 32 100.0 35 ................................ ACCGTGACGAGGACGATTCGCAACAGCCAGGGCAA 39968 32 100.0 35 ................................ CTCGTCGGGCTCGGCTTCGACGTTGACGAGCGCGG 40035 32 100.0 33 ................................ CTGTTCGCCGGCTTGCGGAAGGCGAGCGCGCAG 40100 32 100.0 32 ................................ CGCCTGTGGGTCGGCTACCAGCGCCAGCTTGA 40164 32 100.0 34 ................................ CTGTTCGCCGGCTTGCGGAAGGCGAGCGCGCAGA 40230 32 100.0 35 ................................ ACCTCAGGAATGAGTGGTTAGGCCGCGCTTGCGGC 40297 32 100.0 34 ................................ CACGCGGCCTGCCAACGGGCCGGGTCGGGAAGGG 40363 32 100.0 34 ................................ CCGCCCCGGTACAGGCTGATGACCGGATCACCAT 40429 32 100.0 34 ................................ GCGCAGGCCAGCGAGTGGGCTTGCCTCTGGACAC 40495 32 100.0 36 ................................ TGACCGGGGAGAAGCCCGATGAACCGCCTGCTCCAC 40563 32 100.0 33 ................................ ACCTGATTGGTGGTGCCGGTCAGCGTCCCGACC 40628 32 100.0 36 ................................ GACGTCTACCGCCCGGCCGGCACAACGGACCCGCTC 40696 32 100.0 33 ................................ GATGAGCAGGGCCACGCTGTCGTGGTGGATGGC 40761 32 100.0 34 ................................ TTCCGACCAACAGACGATCCTCCACACAGCGCGG 40827 32 100.0 33 ................................ AGCAAGGCCGTCCACGTCGAGGGCTTGCCGCCC 40892 32 100.0 32 ................................ AGCGCATCGTGGAGATATTCGAAGAGGGCTTG 40956 32 100.0 33 ................................ TGACCGGGGAGAAGCCCGATGAACCGCCTGCTC 41021 32 100.0 33 ................................ CGCCAAGCACACCAGCTCGCCCGCCGCGAACGC 41086 32 100.0 34 ................................ AGCGGGTGGTCCTGACGGTCGACGTGCAGAAGCG 41152 32 100.0 35 ................................ AGGCAAAGGCTGGCCGCGCCTTCACCATCAAGGTC 41219 32 100.0 34 ................................ CTGCTCGAGGATGCCGACGGCAAGGACCCGGCGG 41285 32 100.0 34 ................................ AAAGCGAACCCCCGCGCCTACGGTGTGGATGCCG 41351 32 100.0 32 ................................ TCGGTGGAGCGGCGGTTGCCCCTGTCGCCGAC 41415 32 100.0 32 ................................ GCCCTGGACGGCACCAGTCGCACCGACCTGTC 41479 32 100.0 32 ................................ CACTTGTTCGGAGCCATAGCCGAGTTCGAACG 41543 32 100.0 35 ................................ ACGATCACCGCCGACGAGCTGCAGGACGTGTTGCT 41610 32 100.0 33 ................................ ACCCCGCCCACCGGCCCCGGTGTGCCGGTGGTG 41675 32 100.0 34 ................................ GTCCTGAAGGACGAGGTGCCGACGGACTACGAAC 41741 32 100.0 34 ................................ ATCAGAAAGGGCACGCCCGCGGCGGCGCACTGGT 41807 32 100.0 32 ................................ GGCCAAGCCGCGCAAGGGCGGCAAGGGCGGTG 41871 32 100.0 37 ................................ ACCCCCGCTGTAGGTGCCTTCGGTGTTCTCGTCGGTG 41940 32 100.0 33 ................................ TGTGACGTCGGCTGGGCGTGGGGCATGGGCCCC 42005 32 100.0 34 ................................ CCCGGCGCACTCGATGCCGGTCCCCGCGAACTGA 42071 32 100.0 34 ................................ CCTTCCAAGGGCTCACCCGCATCCGCCGGGAGAA 42137 32 100.0 32 ................................ TTGCCGGTGACCACGGACCAGAAGTCTTGCAC 42201 32 100.0 34 ................................ CTCTATCGGATCGCCCGCAAATACGCAGGGCGAC 42267 32 100.0 33 ................................ AGCTTCTTCAGAAGCGTCGACGTCTGGAAGCGG 42332 32 100.0 34 ................................ AAGCCGGGTGAGCCCGGCACGCCGGTGTACCGCG 42398 32 100.0 34 ................................ ATCTCTGTCGCCGGTCGCCAAGATGGCGGAGGCC 42464 32 100.0 33 ................................ AGCGAGGCGCGCGCCCTGGCTCGCCTGACGGTC 42529 32 100.0 34 ................................ GCCGTAGAGCACCGCACAGTCCACGACGAGGGCT 42595 32 100.0 32 ................................ CTGAATGGCTTTCTGGCCCGCGCGACGAAGGT 42659 32 100.0 32 ................................ GCGCTTCGTCAGCTGGGCCAAGATGGTCGAGA 42723 32 100.0 35 ................................ ACGCGGGGCAACGAGACGCTGATCGCGCAGCTGAA 42790 32 100.0 33 ................................ ATTTAGCAGTCCTCCGCGCCGGCCCACTCGGGG 42855 32 100.0 32 ................................ TATGAGCAGTGGAAGGCCGGATCGAAGTCCTA 42919 32 100.0 34 ................................ TGCTTCAGCACGAACTCCAAGGTCCACTGCACGT 42985 32 100.0 34 ................................ CATCGAAGACGTGCCGGTGTTCTGGGATCGCGCC 43051 32 100.0 33 ................................ CGCCAGACGAAGAGGGCCTTACGGTCGCGGGAA 43116 32 100.0 34 ................................ ACCTCCAGCCACGTCCGCATGTCGCGGCCAAGCT 43182 32 100.0 34 ................................ ACGCACCCCGGCGGCAGCGATCCGGCACGCGCTG 43248 32 100.0 33 ................................ AGCGAGCAACTGACCACCCTGTCGGTGGGCTTC 43313 32 100.0 32 ................................ ACGTCGATCCGGTCACCGTAGACCTTGGGCAG 43377 32 100.0 34 ................................ GCCGAAGGCGGCATCCTGGACATCGTGGACGCCT 43443 32 100.0 34 ................................ AAGCGCGCCGTCGCCGAGGCCGTGGCCGCCGCCA 43509 32 100.0 37 ................................ ACGAACTCCAGATTGGGGATTGAATGCCGGTTCGCGG 43578 32 100.0 34 ................................ TTCGTGCCGACGTCGACCACCGAGAACAGCGGGC 43644 32 100.0 33 ................................ AGCCAGCCCTGGACGGTGCGCAGGCTGACCGGC 43709 32 100.0 33 ................................ ACCGCGTTCAACGCTTCCACGACGGGTGTTGTC 43774 32 100.0 34 ................................ TGCCCGCAGTGGTAAAGCTCGTGCTCCACCATGG 43840 32 100.0 32 ................................ ACGGTCGTCAGGTACCGCCTCGCGTCCCGCAT 43904 32 100.0 32 ................................ GAGGTTCGCCAGGAACTCCGGAGACACCCCAA 43968 32 100.0 35 ................................ CGCGCCGCCTGAACCCCCACGAGGCCCCCATGACC 44035 32 100.0 32 ................................ GGGTTGGTCTTGTCGGTCATGGAGGTCTCCTC 44099 32 100.0 34 ................................ TCGGCGCCGCGTTCGCCACCGGCATCGCGCCCGC 44165 32 100.0 34 ................................ TTTCTGCGTTCCGAATGGGGAACCATAGTGCCCT 44231 32 100.0 30 ................................ TTGCTGCGGCGCAAAAGCCTTCGCAAAGGC 44293 32 100.0 35 ................................ GCCTCCTCAACGACCGTGGTGACGATGCAGTTGAG 44360 32 100.0 33 ................................ GTCGCCTGATCGATGGCCGCCGCGAACTTCCGT 44425 32 100.0 35 ................................ CTCCCTGAGACTCACCGCCGGGTCGCGCTCAAGCA 44492 32 100.0 34 ................................ AGCCACTCGCGTCGGTTGCGCTCAGCGGGCCTTG 44558 32 96.9 36 ..............A................. CCCCCATTCAGGAGCCAGCCGGCCAAGTCCCCCCCT 44626 32 100.0 33 ................................ GCCTTCTCGATGGAGTTCGGGACACGCACCTGG 44691 32 93.8 34 ......C.......................G. GACCGAGCGAAGTGGGAAGAAGGCCCGTCCGCCA 44757 32 100.0 34 ................................ AACCGCCTCCAGTCCCAGGCGATGAATCTCGCCC 44823 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 116 32 99.9 34 GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Left flank : TTCCTCTGGCGGTGACGCGGTGCTGGTCCTGGTCTGCTATGATGTCTCCACGGAAACCCCGGCCGGCCGTCGCCGCTTGCGCCGTGTGGCAAGGGCTTGCCAGGACCACGGCGTGCGGGTTCAATATTCAGTGTTCGAATGCACGGTCGATCCCGCACAATGGACCGCGCTGCGCGCGTCCTTACTCGGCTTGATCGAGCCGCAGACCGATAGTCTGCGCTTCTATCTTCTCGGTTCGTCGGCGCGGCACAAGGTGGAGCATGTCGGCGCTCGCACACCGACCGATCTCGATGGGCCTCTAATTCTGTAATTGTCAGCGCCTGTGCGAACCCCAAGCTCCCATGCATGCTCCGGGAGGATTCGCGCTCCAGAAAAGTCAAGGCTTCTGAATGCCTTGGCGCCTACGCTGGCAATGCGAGACGGTCGCTCTTCCATCAATCACATTCGTTCGCATATTGGTTGCCGTTTTGCATGTACAGCCAATAGCTTATACTATGGCG # Right flank : CGTACGCCTCCGGTAAGCACCGCCTTGGCAAAGTAGGGTCTGGCGTCTGAGGTTTGCGTGGCGCGTCATCGCGCGGACGCAAACGAGTTGCAAACGTCATGGCTTATTAGCGGGTCGAGGTTCTGACGGGGACGGAGCGGCGGCGGACTTACACGCCGGCGGAAAAGGTACGGATGGTCGAGGAGGCGTTCCGCCCCGGCGTGGTGGTGACGGAAGCGGCCCGCCGGCTGGGCGTGCACGAAAGCCTGCTGTACCGCTGGCGGGGGCTGATGAAGGCCACGGGGACCGCCATGGCCGAACCGTCCAGCTTCGTCGCGGTGACCATCACGCCGGAGCCGACCGTAACCGAACCGCCGGTCGTGGAGCCTCCTGCGCCATTGCCGGCTCCAGCCGCACCGGCCTCGATCCCGGGGGTCCTCGAGGTCATCCTGCCCGGCGGGGCACGCCTGCGTCTGGAAGGGCCGGTCGATCCGGCCCTGGCGGCGGCCGTCATTGGTGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 48346-48578 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRJ01000005.1 Azospirillum baldaniorum strain Vi22 NODE_5_length_125803_cov_28.042323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 48346 32 90.6 34 C.GA............................ GAGTCATACGCCCGCATCGTCGTGAGCGGCCGTC AC [48349] 48414 32 100.0 34 ................................ AGCTCCTTGCCGATCCGGATGGCCTGCTCCTCGT 48480 32 100.0 35 ................................ CTCCTGCGAAAGCTGCCCCAGCGTCACCTGGGCGG 48547 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Left flank : AGATTGGCCAGACCGTCCGGGTCAACAGTGGTCAGGGCGAGGAGGGCCGGTTCCGCATGCACACCGTGTGTGGGTTGCTGATGCACGCCAGTCTGGCGGCCACGACCGAGGGTCTTCCCCTGGGGCTCGGCGCGGTCAAGTTCTGGACCCGGACCAAGTTCAAGGGAACCGCCGCCCTCAAGAGAAAGATCAACCCGACGCGGGTTCCCATCGAGCAGAAGGAGAGTGTCCGCTGGCTGGAGAACCTGCGCCGGACCACGGAACTGTTCGGCGATCCGGGACGCTGCATCCACGTTGGCGATCGCGAGAGCGACATCTACGAGCTGTTCTGCTTGGCTCAGAAGATGGGCACGCATTTCCTGGTGCGGACCTGCGTCGATCGGCTCGCCCTTGGTGGCGATACGACCGTCGACGCCGTGATGGATGAGGTCGCCGCCCAAGGCGTGCATGCCGTTGCTGTCCGAAATGGCAAAGGTCGCCTCGACACGGCGAAGGTCGAA # Right flank : CTCCGAACAGGTCACCGGTGACGCCGCTGCATGGTCGCCTCCTGCACGGAGGGCCGTCCCATCTCGCTGTAGAACGGCCGCAGATGGGCGCGGATGCCGGACAGATCGACAAACCGGTCGATCAAGCGAAGCAGATGATCCGACGGGATGTGGCGCTCGAGGCTGAACTCGTAGAACAGCGCCTCCTGCATCACCGTCCGCTCGCCCATCATGGCTGCGTCCTCCTTCTGCCAAGGAGGATTGAATCAGGGCTTCAAGCGGTCGGCAACACCGACTTTTTCAACACTATCGGCGCAAAGCGGACAATCTCACTCGTACCGAAAGGGGCAACTTCCCTGCCCCCGATATGGAGGTAAGCGTCGTCCTGAGGCTGCCTTGTGGGAATGGGGGCGGCGTGCTGAAATCTGGAGGTCGCCGCCACTGTGCGTGGCCGGCTCGGCATCGTGGCACGTAGCGTGATTTGCACCGCGGCGGTCCAGCGTATTGAGGTCATCACCGGC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //