Array 1 24117-24924 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLC02000125.1 Pseudomonas aeruginosa strain COPD6d Contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24117 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 24177 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 24237 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 24297 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 24357 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 24417 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 24477 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 24537 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 24597 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 24657 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 24717 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 24777 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 24837 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 24897 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35337-33449 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLC02000125.1 Pseudomonas aeruginosa strain COPD6d Contig60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35336 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 35276 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 35216 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 35156 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 35096 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 35036 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 34976 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 34916 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 34856 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 34796 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 34736 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 34676 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 34616 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 34556 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 34496 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 34436 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 34376 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 34316 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 34256 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 34196 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 34136 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 34076 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 34016 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 33956 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 33896 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 33836 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 33776 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 33716 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 33656 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 33596 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 33536 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 33476 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTCATTAGCCCGGCAAGTCCGGGCAT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //