Array 1 1231851-1231419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134516.1 Neisseria animaloris strain NCTC12227 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1231850 36 100.0 30 .................................... CAATTGCAGGATATTGAGCGTAATGCTGAC 1231784 36 100.0 30 .................................... AAAAATAACTACGCCATAAATACTGATTCC 1231718 36 100.0 30 .................................... TTTCTCTCTCAAGAATTGCAGGATGATCTT 1231652 36 100.0 30 .................................... GCGGTCGTTACCCAAACTGCCCCATATAGT 1231586 36 100.0 30 .................................... CGTAAGCTGCGTTTCGTGCCGGGGGAGTTG 1231520 36 100.0 30 .................................... CTACATAAATGCGCCATCCGTATTTATTAT 1231454 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : CAAACTTTACAGCAAGAGTTGAATCTGTATTTTGAAGGCCGTCTGAAAAACTTCGCTACGCCGCTTGATCCGGTCGGTACGCCGTTTCAGCAGCAAGTTTGGCGCAAACTGCAAAGCATTCCTTACGGAGAAACCCGCAGCTACAAACAACAGGCGGAACGCATCGGCAAACCGCAGGCCGTGCGTGCCGTAGCCGCGGCCAACGGACAGAACAAGATTTCCATCCTGATACCGTGCCACCGCGTGATTGGCAACAACGGCGATTTAACCGGCTACGGCGGCGGCCTTGCACGGAAAAAGGCGCTGTTGGAATTGGAAGGCGCGATACCTGTCTGAAAAAGAATAGCGGGAAGCTAATATTGCTGTGATGATAATGGTGCATTGGTTCATACTTAACATTATGTTGCGGCAGGTAGGAGAGTTTCCAGACGGCCTCAAGGTTGCCGGATATGGATTCAGGTTCGCCTCTTGGATATAGGATAAAAAAGTGCACAGGATGG # Right flank : ACTTCAACAGGTAAGCCTTATAAAATAAGGCTTACCTGTTTTATTTTGATTAAAAAAACGGCTTCAAAAAAGTAAAAGTTGGTCGGCATTGACCTTTTTTTCGCGGGGTTTGGGTTCGCCAATAAGCATGACCATACTTGTGTATTGCTTTTCTGTTACCTCCAAATAGCGTACTTGGCCTTCTTCCGGTAAATGCAGCATCAATCTTTTGTGGTGTTTCTGCAACGCGTCCCTTCCTTTTACAATGCGTGAATAAACTGATAATTGCAGCATGTGATAGCCGTCTTTCTGCAAAAATTTACGAAATTGGCTAGCTGCTTTTCTTTTGGCGGCAGTGGTTACAGGCAAATCAAAGAAAACAATTAAGCGCATAAATTTAGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGCGGTAGCTTTAACAGTTTGGGCTTGTTTTGGCTGACGGCCGTCTGAAAAGATTGGATGGTGCGGTCTATGGCAGCCAATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1889555-1889321 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134516.1 Neisseria animaloris strain NCTC12227 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1889554 32 100.0 36 ................................ CCGTGGAGGCACTCCCGTTACAATTTCATACGCCAC 1889486 32 100.0 35 ................................ AAACCCGGGCGGGTACACATTGGCTCTCTGTTTTA 1889419 32 100.0 35 ................................ GAAGGTTCCGTCTTTAATGGGGGCTTTAACCGCCA 1889352 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 36 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AATAGGGGAAATAGCATGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACACAGAGGGACAGGCGAGGTTGCGGCGCATAGCCAAACATTGCTTGGATTACGGGGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCGGATCAGTGGGTGAAACTTAAAGCCAAATTATTGGATACTTACCAGCCCGAAACCGACAGTCTGCGTTTTTACCATCTGGGCAGCAAATGGCGGCGAAAGGTGGAACATCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAACATGGGGAGGTTAGCGATGCGGAATTGTTCTTTAACAATCAGGAATTTGAAATATGCGAGTGGAGCAGAATAAGGCTGTGCTATACTCGCTTTTCGCGTTTTCGGAGAGCTTTAGCGAATCAGGGCTATGCAAGCCTTGATAGATAAAGATTTCCGAGAAGGCT # Right flank : ATCCATGAAAGGTTTATTTTCTTCATCTCGGACCCAGCCGCTTTCGGGTGTTGAATTAGACAAGGCCATCTGAAAAAATTTCAGACGGCCTTATTTCTGTTTAATCAGTAAAAAATAGAAAATGATTTAACAGATGGATCGAAATTACAAGCCGGGGAACATGCCTTTCATTCCCTTCATTCCTTTTGCCATGCGCATCAGTTTTGCCATGCCTTTGCCGCTAAACATCTTCATCATCTGTTGCGATTGTTCAAACTGCTTAAGCATTTTGTTAACTTCTTGTACCGAAGTGCCTGAACCTTCGGCAATGCGGCGTTTGCGGCTTGCTTTGATCAATGTTGGGTTAGCACGTTCTTTAGGCGTCATGGAATTGATGATGGCTTCGACATGTCCCATTGCTTTTTCTGCCGTACCTTCAGGGATTTGTTTGGAAAGTTGGCCCAGCTCACCCGGCATTTTCGACATCAGGTTTTCCAGCCCGCCCATATTGCGCATTTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2069126-2068961 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134516.1 Neisseria animaloris strain NCTC12227 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2069125 32 100.0 34 ................................ TTCGTAACCGCGTCGGGTAAGCCCAAGTTCCTGC 2069059 32 100.0 35 ................................ GGATGTATAGGCTTTGAGCCTTGGGCCAAAGAAAC 2068992 32 84.4 0 .............A....T.....A..A..C. | ========== ====== ====== ====== ================================ =================================== ================== 3 32 94.8 35 TCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC # Left flank : TTATCGCCGAAGGCCCCACCGAAGCAGAGCTGGCCCAAGCCAAAGCCAATCTTACCGGCAGCTTCCCGCTGCGTTTCGACACCAACGCCAAATTGCTCGGCTACCTGAGTTTGATCGGTTTCCACAATCTGCCCGACGATTATCTCGAAGCCTATCCGAAAGCCGTTTCGGCCGTTACCGCCGAACAAATCAAATCCGCATGGCAACGCCGCGTGAAAGCGGAACAGATGAATATCGTGGTTGTGGGCGCGGATAAATAACGGAAGGCCGTCTGAAATGATGTTTTCAGACGGCCTTTATGGAAAGGCGCATATCCTTACATATCGGTGCTGACCGGCGGTTGCCATCCGAAAGCCGTAAGGTTGGCGAAATATTTTTTTCGGTTATTCAGGCAGTTAAAAATCAAGCGGCTGTGATATAGTCTGCTTGTGCAGCTTTTTGAACAGGTTGGCGAAAACGGGCTTCCGAGCCTTTGCCTGCCAACGGTTTGAGAAGGGGCT # Right flank : GTTTCAAAACACAACAGGCCGTCTGAACATTTTCAGACGGCCTGTTGTCATTTCAAACGCCTTAATTAAATACGTTTCGCCAATGCTTCGGCTTTGCCTACATACAGCGCGGGTGTTAAAGCCAGCAGCAGCTGTTTGGCATCGGCGGGGATGTCCAGCGATTCGACAAACACTTTCAGCACTTCGGGCGTGATGCCGTCTTTGCCGCGGGTGAGGTCTTTCAGTTTTTCATACGGATTGGCCACGCCGTAGCGGCGCATCACGGTTTGAATCGGTTCGGCCAAGAGTTCCCAAGTGGCGTCCAAGTCGGCGGCAAGGGCGGCGGGGTTGGCTTCCAGTTTGTTCAGGCCGCGCAGGTGGGCGGCCAAGCCCAGCACGGTGTAGCCTGCGCCCACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGAAACGGGCAGTTTTTCCGAAAGGAAGCCCAACACGGCGTTGGCCATGCCCAAGTT # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //