Array 1 4732-5919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVLX010000013.1 Escherichia coli strain HECR8 NODE_13_length_98907_cov_77.9609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4732 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 4793 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 4854 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 4915 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 4976 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 5037 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 5098 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 5159 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 5220 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 5281 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 5342 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 5403 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 5464 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 5525 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 5586 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 5647 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 5708 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 5769 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 5830 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 5891 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83074-83774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVLX010000016.1 Escherichia coli strain HECR8 NODE_16_length_84297_cov_81.0101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83074 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 83135 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 83196 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 83257 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 83318 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 83379 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 83440 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 83502 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 83563 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 83624 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 83685 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 83746 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //