Array 1 13306-16356 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNKH01000821.1 Xanthomonas oryzae pv. oryzae strain HeN03-16 scaffold821, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 13306 31 100.0 35 ............................... AACAAAGTGCTCAGGTAGGAATGGGGATCCTTCCT 13372 31 100.0 35 ............................... CACAGGGGCTGCAACTCAGTCCTGGGGCTTGTTGA 13438 31 100.0 35 ............................... GTACTAGGTAGAGCCTATCCTTGGGCCGTGGGTGG 13504 31 100.0 34 ............................... TTAGTAGTTGTGCTACTAAAGGTCAGCTGCACCC 13569 31 100.0 36 ............................... ATACAATACTCCCGTGTGTTGGTGTGTTGGCAAATA 13636 31 100.0 35 ............................... CAGTGCAGCCAGCATCCTTGCATTGACTCTCCAAG 13702 31 100.0 35 ............................... AACCTAAGCAGATGGGAGGGCTACCTTGCAAGACG 13768 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 13834 31 100.0 36 ............................... GTCCAATCACTTGTCGAGAGTGGCAAGCAGACTGAG 13901 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 13967 31 100.0 34 ............................... ACGATGGTACAACCACGAACTGGACAGACAATTA 14032 31 100.0 35 ............................... TGGTGCTACCGGCACGGCCTGCATGCGCCACGGAT 14098 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGAGGCGTTGGTG 14163 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 14228 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 14294 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 14360 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 14426 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 14492 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 14558 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 14624 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 14689 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 14754 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 14820 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 14886 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 14951 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 15016 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 15080 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 15145 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 15210 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 15274 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 15340 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 15405 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 15472 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 15537 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 15605 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 15671 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 15735 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 15800 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 15867 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 15931 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 15998 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 16063 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 16129 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 16194 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 16261 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 16326 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 47 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //