Array 1 101592-102341 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJW01000003.1 Nitrosomonas ureae strain Nm5 Ga0181075_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 101592 32 100.0 33 ................................ TTTGAAAAGTGCGGCAGCATGTGAATCACCGGT 101657 32 100.0 33 ................................ ATAGCTTCAAGCAAATATCTTGGTGGTTTTATT 101722 32 100.0 34 ................................ GATAATGGCCTGCGTTTTGAAACCACGAGTTTGA 101788 32 100.0 33 ................................ TTTTTTACAAGCTTTAAAAACATGGCTACCCAA 101853 32 100.0 32 ................................ ATCTAAGTAATACCAGTCTATTAAAGTCCTGT 101917 32 100.0 34 ................................ GCCTGTGGTGTTTGAACCAGAAACCCCGATTGAA 101983 32 100.0 35 ................................ ATGAGATACAAGAAAACATAAATAACTACTTTAAA 102050 32 100.0 34 ................................ ACAAGCCCTGGTCAATGGCCATCGGCGATGCTGA 102116 32 100.0 33 ................................ TCAGGTCGGCCCTCAGAGCGGCAGCAAAACCAA 102181 32 100.0 33 ................................ TGGTTTCTCCAGATCAATCGGGGTTCTCTCTGC 102246 32 100.0 32 ................................ ATCAATGGCCGTTTTGATCTCTTTGGTGTGCT 102310 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 100.0 33 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TGCCTTTTCTGTGGAAATAATTTAGAGGTTCTCAGATGATGATTTTAGTGACTTACGATGTCAGCTTTAAAACCGATACCGGGCCAAAACGTTTACGAAGGATTGCAAAATTATGCCTAAACTACGGCCAACGAGTACAGTATTCAGTATTCGAAATAGAGGTTGATATGGCACAATGGACAAAGCTAAAAAATGAACTAATCGATGCTATTGATGAAGAATTCGATAGCTTAAGATTTTACTACCTGGGAAATAACTGGGAACGGCGTGTTGAACATATTGGCGCTAAAACAGTATTAGATTTAAATGGCTTGATATTACTGTAATGCGAATCCTAAGCGAGCATAAAAGCATCAATATTTTTGCATCCATTAAGATAATGATTTTTCTTATTTTTTATTTCAGCAGTAAATAATTTATAATACTTTTCGCAAATGCTTTCATTGATTCGCAATTTATTGGTTTTTTAACCAATGATTTCAATCAATTAAGCATACGCT # Right flank : CACCCGTTATTAATTCGACCATATCAACTGCCAGCACAGTGGTGTACGACATGACACAAAAGGTAAAGAATTACTCTTTGCTTTGGCTTCCGCAGCTATTCATACCTACTTCGTTATAGCTCGACGTTTCATCACTTTTCCCATCCGCTCGAAGAAGCCGTCTAAAGCAATTCAACGGCAAATTGGATTAGGTGTATTCTGAAAGTTTAGCGTATTACAGCAAATCCAAGAATACAGAGATCGAGAGAATATACAATGCAGTAATATTTACAGTAACTCTTTTAAAAACAATAAATATTCTATGTCTGTCGATGTTTTAGATTCCGGCCCTGTTGAAATTTCATGTCATATCAGACTACAAAGCTAAGTTTCTCGGATTTTTCCAAAGATAGAAGTAATTTAACTAACCCTAACCTAGTAGCGATTCAATATGATTTCCAGCACAAATTTACTGCCGATATAGGCTAGTAATAATATAATGAATCCGATTAATGTCCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1985-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJW01000004.1 Nitrosomonas ureae strain Nm5 Ga0181075_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1984 37 100.0 36 ..................................... CTAAATAAGATTTCTTTTTCATTGAGTTCCATCGAT 1911 37 100.0 33 ..................................... TTAATATACTGTCTAATGTTTCTCTGACTTGAT 1841 37 100.0 33 ..................................... CAAACTTTTCACACGTTCTTTATTTTCTGGTGT 1771 37 100.0 31 ..................................... ATAGCCGATAAACCCTTTATACTTCCCGGTC 1703 37 100.0 34 ..................................... TTTTCAGTGATATCATCGCCATTTAAAGAACAAA 1632 37 100.0 35 ..................................... CATTATCGTTAAAAATATATTATTTATCTTACCCT 1560 37 100.0 31 ..................................... CCATTCAACAATAGTTTCAGCATGCACATGC 1492 37 100.0 34 ..................................... TCATATAATTGATGTATACTCATTACATAATCAC 1421 37 100.0 35 ..................................... GTTCAATGGCTAATGCTTTACGAAAAATTCTATCA 1349 37 100.0 35 ..................................... CCTCTCTGATAGTTGCTATTAATTCCCCACCTGTA 1277 37 100.0 32 ..................................... CAATTGTTTTAATGAATTTATCGCCTGACTCC 1208 37 100.0 33 ..................................... TTTTCCAGATCAACTACCTTAGCAACGATAGCA 1138 37 100.0 33 ..................................... GCAGATAACTGGTGTATGAAGTTTGTTTGGTTC 1068 37 100.0 33 ..................................... CGACAGTAACAATGAATATCCAATCTTTTTTCT 998 37 100.0 36 ..................................... GACAATTCTTTTTTTAGCTGCCTTAAACGTTTAGTT 925 37 100.0 34 ..................................... TTCGTGTTCCGTACATACACCCCGAAGTCCCGCC 854 37 100.0 33 ..................................... CAACCGTGCCACCATCAATCAACACTACGTCCG 784 37 100.0 33 ..................................... TTTTAACGTGTGGTAGTTCATGCCCAGAATTGT 714 37 100.0 33 ..................................... TTGTACTGCGATTGATACCCATAACCACCATAT 644 37 100.0 32 ..................................... TCCTCATATCCGTCGTCCTTGCACAGGAATTT 575 37 100.0 34 ..................................... TTTAACCCAATCCTCTAATGCAACTATATTTTTT 504 37 100.0 35 ..................................... TTCATTTCTCGCAGCGGATCATCTGGGATTATCCA 432 37 100.0 34 ..................................... CCACTGCGCCCAGCAGTGCCGCTTGTAGTACGTC 361 37 100.0 33 ..................................... TTTAAATCAATATCCGTATTATTTTGTGCTGCC 291 37 100.0 33 ..................................... TTTCTGCAAACGCATCCACGTAATCACTTGAAG 221 37 100.0 33 ..................................... TAATAAATAAGCTAAATGCTACGATCATTATGG 151 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 27 37 100.0 34 GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Left flank : CGATCCGCAGATGCGCTTTATCGCCAACGGCGGCTGGCTTGAAATGCATACGTATGCGGCCTGTCTTCAGCTCAAACAGAAATGTGGTATTCAGGATGTGGCGTGCAACATTGTTATTCAACGCCATCCGGCAGGTAAAACTGCGGTAAAAAATGAAATCGATGTTGGCCTGATTCATGCCAACCGCTTGCATTTGATCGAGTGCAAAACGAGGCACTTTGAAAAGGATGCAGATATGCTGTATAAACTGGATAGTCTGCGTGATTTGATGGGCGGTCTGCAGGGCCGTACGATGCTGGTCAGTTTCAACAATCTCGGCAAAGCCAGCCGCGCCCGTGCCAGGGAACTCAATGTTTCTTTGTGTTGTAAAACTGAGTTGAAGCACTTACAGCAACATCTAACCAACTGGCTAACCACGCGAGGCTAACTTTTTAAAAATGAAATTTTTTGTCAACCCTCTCTATAAGCCTATGAAAAATAATGCAGAAACGAATCATGCG # Right flank : CTGCTACCTTTGAAGGATACTGGAGTTGCCCCCTTTGAACGGACACATTATGTTCTGTTTAAAGGAGAAGTAAGATGACACAAAACTACAAACCTGCTTACCCACCTGAGTTTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //