Array 1 12801-7845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGI010000013.1 Roseospira goensis strain JA135 Ga0394285_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 12800 36 100.0 36 .................................... TTGCGGGTCAGAATTACGAGGCCGTCTATGAATGCG 12728 36 100.0 37 .................................... ATGAGTTGGCAGAAACTGCGTTAATCTCACTCCCATG 12655 36 100.0 37 .................................... ATGAACACCCAATTCGCTAGCGAAGGCGGCCTGAGAC 12582 36 100.0 38 .................................... CAGCTAAGTGATTGGCATAAAATGCGTTACCTGAACTC 12508 36 100.0 38 .................................... AGGTGATGTCCATCGACGAGGTGGAGCGCGTGCGCGCG 12434 36 100.0 36 .................................... CTATGTTGGGCGGGGCCGCGTCCATGATGACGGGCA 12362 36 100.0 37 .................................... TGCGCGGATTCCGTCCAAGCATGGCCATGCCCGGAGT 12289 36 100.0 38 .................................... TTGCGCAATTTGGGCGCTTGTCATGGGCGCGTCGGCCT 12215 36 100.0 38 .................................... GAGCCATGCCTCGTCCTCGGGCAGGCCCTGGATCTGCA 12141 36 100.0 37 .................................... GTATCGTGCGCGCACATAAAGACCCCCGCCGGCCGGC 12068 36 100.0 36 .................................... CTCTCGGCTCTGGCGCGCCCGGCCGTCCAGCCACAC 11996 36 100.0 35 .................................... GTCCGGCTGCGCCGCCGCCAGCCCCAGTCCGGCGG 11925 36 100.0 38 .................................... AAGGCCCACTTGCCGCGCAGGTAGCGGTCGCCCCGGAA 11851 36 100.0 38 .................................... AATACCCTTCTGGTCTCTGGCCTCTGGCTTCTGGGTTT 11777 36 100.0 39 .................................... GACTCCAGTACCTCGCCGGTGTCGGGGTCGTGGGCGGGC 11702 36 100.0 37 .................................... ATCGTCTCCGGATCGGGCGGCGCCTCCTTCTCCGCCC 11629 36 100.0 37 .................................... AACATCGTCGATATTCACCTGACACCAGGGCAGGAGC 11556 36 100.0 38 .................................... CTCCGCCATGATGATCGACCAGACCATAGCGCGCGTGC 11482 36 100.0 38 .................................... CCGCCGCCGCCGCGCCTGTGTCACGCAGGGCCGCCGGG 11408 36 100.0 39 .................................... CGCGCCCTGACACTCTGGGGCGGGGTCCTGGAACACCCG 11333 36 100.0 39 .................................... GCGGTCTGGCACAGCGCGGCCAGGGCGGCGTTGAACGGC 11258 36 100.0 39 .................................... CACGACAAGAGCCGGCGAGGGGGATGATCCGGGCGGCGC 11183 36 100.0 36 .................................... TTTCAAGTCCGGCGCCCGCCGGGCGCCGGGGGCGGC 11111 36 100.0 39 .................................... TGTTCCAGGTGCCCGGCCTGGATCTTGTCCTGATAGGCC 11036 36 100.0 39 .................................... CGCAGACCCTGGGGATCATCGCCGCCTGCGCCTGGACGG 10961 36 100.0 38 .................................... CTCAGGCGCTGGCAAGCGCCTGTGCGGACGGCGCGGCG 10887 36 100.0 37 .................................... TTCGGGCTGTACATGTTCACCTTCACCGGCGGCGGGA 10814 36 100.0 38 .................................... TTCGCCTTCGCGGGCGGCTCGCTCCAGCACTCGGGCAC 10740 36 100.0 35 .................................... AGGTTCATCGCTGCGCGCTCCATTGTTGGCGCCAG 10669 36 100.0 38 .................................... CCGGCCGAGACCCATGACTGGCGCGGCCGGCCGTACTT 10595 36 100.0 37 .................................... CTGGATTCAAGCGTTACCACATTCGCGTGGCTGCCGG 10522 36 100.0 39 .................................... GCGGGTCAGCACGTCCAGGCAGCGCAGGAACACGTCCTC 10447 36 100.0 38 .................................... AGAAACAGCAAAATCTGATGCGCTTCTTCGTCGTTCAG 10373 36 100.0 38 .................................... GACGACGACACCTCAGCCATCGGGACCGCCTCCCGGCC 10299 36 100.0 40 .................................... GCCGACGACGTGGCGCCCGCACCCGCCCCGGCCCCGGCGG 10223 36 100.0 36 .................................... GCATGGCCCAGGCGCTGAACGCGGCGGCCGATCAGG 10151 36 100.0 37 .................................... GCCCTCACGGTCGAGGGGTCGAGCATGAACCGCGTCG 10078 36 100.0 38 .................................... GCTTGCCCTTCGACATGACGGAGATGACGTCCCGCTCC 10004 36 100.0 38 .................................... TTCTCGCGCGCGCCCCCACCCCGAGGAGAGGGGAGCGC 9930 36 100.0 36 .................................... GGGCTGGCCGTGCCGGCGGCCGTGTCCCTGGAGCTG 9858 36 100.0 37 .................................... TAGACCCACCGATGCTGGGAAAGCCACGCGAACAGGT 9785 36 100.0 37 .................................... GCGATCCCACCCCACCCCCGGCGCCCGCCTCCCGGGC 9712 36 100.0 37 .................................... GCGTCGTGGAACGCGATCTTCTCCCCGGGGTACAACT 9639 36 100.0 37 .................................... ACGCTCGGCGGCACCATCATCCTGCCGGCCGACCCGG 9566 36 100.0 35 .................................... CCTCCAGTGGGTCGACAAGCCTTTCGTTCGCACGA 9495 36 97.2 37 T................................... AGCGACCGCGAGGACATCAAGGGCGACATGCAGGTGG 9422 36 100.0 37 .................................... CATTACTTCTGATCTTCTGTACGATTACCTGCACATC 9349 36 100.0 36 .................................... TACGTCTCCGGCAGGTTGGCGACGGCGATCAGGGTG 9277 36 100.0 39 .................................... GCGCCGGCCGGACCTGACACCACCACAACCCAATCCGCG 9202 36 100.0 38 .................................... TCCAGCGTCTGCTCCACCGTCGGCTCGACGCTGAAGGT 9128 36 100.0 36 .................................... TACGGATTGTCCGTGCCGCTGTGCGTGCTCAAGACC 9056 36 100.0 37 .................................... TCGTCCCAGGGGTCAGGGCACCCCCGCTGTTGGCCCG 8983 36 100.0 37 .................................... TGGCGATGTCCAGGGCCAGGAGGATCATGCCGCCACC 8910 36 100.0 36 .................................... GTCTGGCTGGACCTTCTTGCGAGCGTAGTCGATCAG 8838 36 100.0 36 .................................... CGTTGGATGTCGGCACAGACGATCCGACCGGGCGTG 8766 36 100.0 38 .................................... CTGTCCTGCATGTAGCCCGGCGGGGTCTCCGGCGCCGG 8692 36 100.0 36 .................................... GCTTCGCGCTTGGCGCGCTTCCATGCGGCCTCCTCG 8620 36 100.0 38 .................................... TGGGCCCCCGCCGAGATCAGCGTGGCCGACACCCCTCG 8546 36 100.0 40 .................................... GGCACCCTTGGCGACGATTTCCTGCACCACGGTGCGGTTG 8470 36 100.0 37 .................................... GCCTCGACGAGGCGGGCCTGCAATGTGGCGATGTCGG 8397 36 100.0 38 .................................... TCCAGCTTGCGGTTGCCGGCCGGATCGGTGACCGCGAC 8323 36 100.0 37 .................................... GTGACCGCCTCGCCCAGGTATTCGGTCATGGCGGCGG 8250 36 100.0 38 .................................... CGTACCTTCGTTCGGATCGTACTCTCCGCCTCGCTCAT 8176 36 100.0 37 .................................... CATCAAAGACGTCGCGGCATGTCGCGAACCGCTTATC 8103 36 100.0 40 .................................... CCGCGAGTGATGCGGATTTTGTCGGGTGACTTTACGGCGC 8027 36 100.0 37 .................................... CATTCCTCGCGGCGACTTCCGGATCTCCTGTCGCATC 7954 36 100.0 38 .................................... CAGTCGGTCAGATCCTCGGGCGACACACCGCGCAGGCC 7880 36 86.1 0 ...........C..CC..............C..C.. | ========== ====== ====== ====== ==================================== ======================================== ================== 68 36 99.8 37 CTTCCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Left flank : ACGACATCGCCGACCCGAAGCGCTGGCGCCGGGTGTGGAAGGTGATGAACGGCTACGGCGCGTGGCTGCAGCTTTCGGTGTTCCAGTGTCGCCTGTCGCGCAAGCGCCTGGTGCAGATGCGCGGCGCATTGAGCGAGGTGATCGAGGCCGGCGCCGACCACGTGCTGATCCTCGACCTGGGGCCGGCGGACACGGTGAAGCCCCGCCTGGAAAGCCTGGGCAAGACCGTGGCGGTGGTGGAGCGCAAGCCCATCATCGTGTAACCTGTGGTCCCGTCGGGGATGGTCGCCGGGCACGCGCGAGCGCTCCGGCGGTGCCCCCGACTCCGGGAGCGCTCGAAAAAAGCTGTTTGACACTGTGAATCAAAGGGTTAGCATGGTCGCAGCAGGCGTCTCCGCGTCCCGCTGAAGGGTCTGAACGGGGAACACGACGAAGGACCCTGGGCAGCGCTCGAAAAAGGCGGTAAACTGCGAGGCGGGTCAAGCGGTTGGACGCGGCCG # Right flank : CCCTGCCGGCGGCCGGGGTGGGTGTCGCCGGCCCGCGCCGGCCCGCCCCCGACCCGCGCCGGCCCGCCCCCGACCGGCGCCGGCGTCACACCCGGAAGTACTTGGCCTGCGGATGCAGCACGACGATGGCGGTGGTCGACTGCTCCGGCACCAGTTCATCCTCGTCGGTCAGCGACAGGCCGATGCGGTCCGCCCCCAGCAGCTCCAACAGGGCGTGTTGGTCGGCCAGGTTGGGGCAGGCCGGATAGCCGAAGGAGTAGCGCGAGCCCCGGTACGCCTGCTTGAACAGGCCCTCGATGTCGCGGCTGTCCTCGCTGGCGTAGCCCAGTTCGCCGCGGATGCGCTTGTGCACTACCTCGGCCAGGGCCTCGGCCATTTCCACCCCGATGCCGTGCAGGTAGAGGTAGTCCTTGTAGCGGTTGTCGCCGAACCACTGCCGCGCCACCTCGGAGACCTGCGACCCCATGGTCACGGCCTGCAGGGCGATGACGTCGCGGGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 77081-77487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGI010000019.1 Roseospira goensis strain JA135 Ga0394285_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================================== ================== 77081 27 96.3 50 .....C..................... AAAGGGATCTCGCGCCCCCGCTCCCGCGGGGCGCCCGGGCTGGAGGGACG 77158 27 100.0 44 ........................... GAGGGGATCTCGCGCCCACGCTCCCGCGTCGGCGTGTGCGTGCG 77229 27 100.0 47 ........................... AGGGGGGGCTTCTTACGCCCACGCTGCCGCGTGGGCGTGTGTGTGCT 77303 27 100.0 51 ........................... GAAGGGATCTCGCGCCCCCGCTCCCGCGGGGGCGCTCGGGCTGGAGAGACG 77381 27 100.0 53 ........................... GAGAAAAGGGGGGTCTTCTTACGCCCACGCTCCCGCGGGGGCGTGTGTGTGCT 77461 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ===================================================== ================== 6 27 99.4 49 GTCCCACGCGGGAGCGTGGGACCGAGA # Left flank : CTCACCGACGCGGCCGGTCGTGGCGCCGTTGCGGGTGAAGTGCTGGGTGCCGGAGCCGTCGAAGGCCGGGTTGGTGACGAAGAAGCCGGGGCCGTTCAGCGCCAGGTCGAGGCCGCGTCCGGTGGCGAGGACGGAGCCCTGCCGGTCCATGTGGCGGATATCGACGGCATTGACGCCGACGAAGCTGCCCTTCGGCGTGACGTGGTTGACCGACTCGCGCAGGTGGGCGTCGAACGCCTTGTAGCCCGTGGTGTTGACGTTGGAGACATTGCCACTGATGCGTTCCATGACATGAGACTGGGTGCTCATGGCCTGGGACGACGTATGCAGGGCGGCGAACACGCTCATGGTCGGGCTCCGAATGGCGGCGCGGACTCTTCCGAGCCGGACCGAAGCATGCGGCGTGCCAGGCGGGACCGCCCGGACTCCGGCCGCCCCGCTCGCGGGCACCCGGCAGACTCTGCCGGGTCGGGGCCGGACTTGCCGGGCCGGGCCGACCG # Right flank : AGAGGGGATCTCGCGCCCCCGCTCCCGCGGGGGCGCCCAACCCCTAGATCAACCCCGCCAGCGGCGAGCTGGGATCGGCGTAGCGCTTCTTGGGCATGCGGCCGGCCCGATAGGACAGCCGTCCGGCTTCCACCGCCAGCTTCATGGCCCGCGCCATCAGGATCGGGTCCTTCGCCCCGGCGATGGCGGTGTTGAGCAGCACACCGTCCACCCCCAGTTCCATGGCGACCGCCACGTCGGAGGCACAGCCGACGCCGGCGTCGACCAGCACCGGGACCGATGCGTTCTCCTTGATGAGGCGGATGTTGACCGGGTTGATGATGCCCAGCCCGGAGCCGATCATGGAGCCCAGCGGCATGATGGCGACACAGCCCATCTCCTCCAGGCGTTGGGCGGCGATGGGGTCGTCGTTGCAGTACACCATCACCTGGAAGCCGTCCTTGATGAGGGCTTCCGCGGCCTTGAAGGTCTCCGGCATGTCCGGATAAAGCGTTTTCTGG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCACGCGGGAGCGTGGGACCGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 19320-18820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGI010000001.1 Roseospira goensis strain JA135 Ga0394285_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 19319 37 100.0 29 ..................................... CGCTGAACGAGCGGCCGTTCCTGAACCAC 19253 37 100.0 29 ..................................... GCCACGGTCTGGCGGGCCCTGCACGACTA 19187 37 100.0 29 ..................................... CTATTATGAGGACTGCGACAATCCTACCT 19121 37 100.0 29 ..................................... ATTGTTATTACATACATGCTCTCTCTCCC 19055 37 100.0 29 ..................................... AGTCGGCCATCGATCCGCTGTCGCAGACA 18989 37 97.3 29 ....................................T GCGATGAGTTCCTTGACGTGGGTCAGCAT 18923 37 100.0 29 ..................................... ACGGCGCGCTGCTGCTGACCCTGGCCGTG 18857 36 89.2 0 .............................GT.-.T.. | GT [18830] ========== ====== ====== ====== ===================================== ============================= ================== 8 37 98.3 29 AGTTTAGCCGACAGGGAACCGGGGTCCAGCCGCAACC # Left flank : TTCCCTGGCAACCAGCTTCGAGGCTGGCTCGGCGGCCCTAGACCTACCGACCACGCCGACGGCGCTCGACCTTGTCGGATGCGAGCGGGCGCAATGACCCACCTGTCGGGATATCGCATGACATGGATGATGATCCTGTTCGACCTGCCGGTTGGCACGAAGGCAGAACGCAAACGCGCGACCACCTTTCGGACCTACCTGCTCGATGCGGGGTTCGAGATGGTGCAGTTCTCGGTCTACGCCCGGTTCTGCGCGACTCGGGAGCTGGCGGAAGCGCAGACCCGGGAGATCGAGCGCAACCTGCCCAAGGCGGGAAAGGTCTCGATTCTCTACTTCACCGACAAGCAATACGAAACCTGCCGAACGTACACCGGGGTCTCGCGCCAACCCCAGGCCGGAAAACCGGCCCAGCTCGTGCTGTTCTGAGGGGCCGCGATCTTGCATCTGGGGGTGTCCGGCACAAAAAAACGCCCTGAACACAGGGCGCTAGGGGGACATGC # Right flank : CGATTGTTTGGACAGGTTCGGTGGGTTCGTAAGCTCTGAGGGGCTCCTTGGCGGGTTGGTGGGTGACGGTTCAGGCGGCCAGGCCCGCCGTCTGCAGGGCGGAGCGGCAGCGGAGCCCGGAGGACGGCGGGCCTGGCCAATACACTTCGTCGGGCGTTCGATATGCCAGCCCCTGGTGTGGACGCCGGGTGTTGTAGGTCTTGATCCACGCGCCGATTCCGGCCCGGGCCTCGGATCCGGTGGCGTAGGCCTTCAGGTAGACGTCCTCGTACTTCAGGCTGCGCCACAGGCGTTCGACGAACACATTGTCCATGCAGCGCCCCTTGCCGTCCATGCTGATGCGCACGCCGGCATCCTGGAGAACGCCGGTGAAGTCCAGGCTGGTGAACTGACTGCCCTGGTCGGTGTTGAAGATCTCGGGCTTTCCGTAAATCTCCAGTGCCTCTTTCAAGGCCTCGACACAGAAGTCGGCGTCCATGGTATTGGATAGCTTCCAGGAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCCGACAGGGAACCGGGGTCCAGCCGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3780-4314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGI010000007.1 Roseospira goensis strain JA135 Ga0394285_07, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3780 37 100.0 33 ..................................... TTCATCTCCAGCACGCGACCGCGCACGACGTCG 3850 37 100.0 35 ..................................... TGATGGGCTCGACGCGCACGCGCGTCTTCCCCGAG 3922 37 100.0 31 ..................................... TACATCCGGCCGCTCGACCAGATCCCCGGAG 3990 37 100.0 34 ..................................... TCGATTGCATTCCGCGACAAGACCATCGTGATGC 4061 37 100.0 36 ..................................... TGAGTGGTGACGTCTTCCCACGCCACCAGGAAATAC 4134 37 100.0 33 ..................................... CGCCCGCAAGTGCGGAAACGAATTCCTGCTGCC 4204 37 100.0 37 ..................................... ATCGTCGGCCAGCCGGCGTCCGCGGCCAGGGCGGGGG 4278 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 34 GGTGACCACCCTTCCGCTTATCCACGCGGACTGAAAC # Left flank : CAGCGTCGCCGGCGCACTCGTCTCTGCCGTCGTGCTCCTGGCCGTCAGCCCGAAGTTCTTCGAAAACCTGCCCTGGTTCCGCGACAGACTGAAGGACAAGACCGGCGCGCAGGACCGATGGCGACGTCGGGCACGCAACGCCATCCTGATCGGAACGTTGGCGACGTTCCTTCTGGGCTATGGCTTGCAGTGGTCGGGCCGGATCATGGTGCAGGAGACTGAATCGGGCTTAAGCGTTGGGCAGACCGATCCCGGCGCGCCGCCGGCACCGGGGGATGGCGGTTAGCTCTGTCCGACCGCGTGCGAGGTCGAAGCGGCACGAAACGGCGCCGAAGCCCGGCAAGAACCAAATGGCGCTGCCCGATCAAAGGGTTGGCTCTTAATCAGCGCAAACGACGGTCAGTGGAAACAGCGGAAGCTATTGGAAATAATAAAGAAATGATGCCCGGGACTGCGCTTTTTCTATCTAGGGATGCAAACGGTGACTCTGAACTCGCCAT # Right flank : CGGCCTGTTCCAGTGAAACACCGTTGACGGTTTTCACTGAATGGAGCAGTTTCAGCGGATGATGAAATCGCCGCATTCGGTGAAAGAGGTCGAGGCCGAAGCCGCGACCGCGCTCCGCGCTCTCCTCGACGAGGTCGAAGCCGTCGAGGTGGAGGCGGTGGACGGGGAACCGCCCGCAACCGATCCTGGAATCGACATGGTCGTGCGTCTCACGGCCTGGCACGGCCCGCACGTGCTCGTCTGTGCGATCAAGACGAACGGACAGCCGCGCGAGGTCAGGCTGGGCCTGCATCGACTTAGCGAAACCGCCGCACGGTTCGGTAACGGCGCGACGCCCGTCTTCATCGCCCCCTACCTCTCGCCGGCGGCGCGGGCACTGTGCCGGAACCACGGGGCGGGTTATCTCGACCTGCACGGGAACGCCCGCATCGTCTTCGGCGGCGTGTTCATCGAGCGCCATGTTCCGGGCAAGCCGCCTACGGAGCGGCGCGCACTCAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGACCACCCTTCCGCTTATCCACGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 14081-15924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGI010000007.1 Roseospira goensis strain JA135 Ga0394285_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 14081 37 100.0 39 ..................................... AGCTCCTCACTGGGGCCGGCCGGGAACGCTCGCCGGGGG 14157 37 100.0 32 ..................................... CACCATCCCCGGCACCCGGGTGTTCACCTGGA 14226 37 100.0 33 ..................................... TCTCCTCGGTGGAACCCCCCACTATGGGGGTTC 14296 37 100.0 31 ..................................... ATGATGATGCGTCCACACCGAGGGCGGCAGG 14364 37 100.0 34 ..................................... ACACCATCGTTCTTGGTTGCAATCTGCTCGGGAT 14435 37 100.0 33 ..................................... GCCGTTGTTCTGGTTCCAGCCCAGCTGGCTGAT 14505 37 100.0 41 ..................................... GTACGATGACCATCCTTCATCACCAGCACCAAATCGGTGAT 14583 37 100.0 37 ..................................... ACATCCGCCTCAGGCAGAGGCTGCAACAGGGCATGCA 14657 37 100.0 36 ..................................... GCGCCGCGCGCAACCCCCGCCGCCGATCTTCGGGCA 14730 37 100.0 30 ..................................... GCGACCTCGTTGGACCCGCGCAGAGCGGCA 14797 37 100.0 35 ..................................... CCAACCCTGACCTCTTTTGCGACGCCTTTCGTCTG 14869 37 100.0 37 ..................................... TTGTACTGGGCCACGATGAAGCAGTCGCCAGACGCCA 14943 37 100.0 34 ..................................... AGATCCGCCGGTGCCGGCGGTTCCTTCTGGCCCT 15014 37 97.3 36 .............G....................... GGCGTCCTGCAGGGCCTGGGCACCGATCGCGGTGCC 15087 37 100.0 35 ..................................... CTCCTGCCGGCGTGCGGCAAAACCACGGAGGGAAA 15159 37 100.0 44 ..................................... ACCGGGCTGTCCACGTTCAGGTTCAGCGCCGCCTGGGCGCTGAA 15240 37 100.0 33 ..................................... AAGCGCGGCAACCTTCGCCATGAACTTGCGCGT 15310 37 100.0 38 ..................................... ACGAACCGGTCACGCACATGCACGCCATGTTGGGCGTG 15385 37 100.0 33 ..................................... TTTCAATGCCCGCACCTCCCTTAGAGTCGCTTG 15455 37 100.0 35 ..................................... GATGATCGCCAGGTACGCCCACTGCCAGAGCGCCA 15527 37 100.0 42 ..................................... ACAGATACGATTTCCGCGACGGTTTTGTAATCCTGGAATGGG 15606 37 100.0 34 ..................................... CTGTGTGTAGCCCTCTGTAGAGAAGATCTCGAGG 15677 37 100.0 31 ..................................... TTTGTACGCGGCAATATCCACTTCGAGCCAA 15745 37 100.0 36 ..................................... TCCACATTGAGACGTTCAATCTCGCCCTTGCCTTCA 15818 37 94.6 33 .........T.......C................... GGCAGCGACCCAGGCAGCGTCCTCGGCAGCGGT 15888 37 94.6 0 ...............................C....T | ========== ====== ====== ====== ===================================== ============================================ ================== 26 37 99.5 35 GGTGAACACCCTTCCGCTTATCCACGCGGACTGAAAC # Left flank : ATCGGTCAGGCGCCCCTGGATTACATGCGTTTGACATCGTTCAATGCCATCCGGAAGGCGACGAAGCCCCGCGAGGACCAGACGCGCCCGGCGGCCATCACCCCGGCTAATGGCGCGGCGCCGGTCCCGAGCGTGCGCGACCGTTTGCTTCCGGCGCCGCCGGCGGAGGTGCCGGCCGTGCCGACAAGTCCCAAGGGCGTTTCGACGAAGGGGTGACCAGAGCCAGCGCGACCGGCCGGGACGGCCATTCCGACGAGTGTCCGGGCCTGCGCCCGGCAGGCCCGGGATTTCGTGAAAAAAGGCATTTATATCAGGAGGTTACGGTTCATTCCATCGGATTGAAGATCAGTGGAAAACTGCAAGGCCATGTACTACCTGAAAGATTTTGACATGAAAACACGTCATTATAGATTTCTAAGGGTGAATCGCTCATTGGTTTTGCGTATGGGTGGAAAGTGGCCTAAAACATCGGCCTTGATCAGGGGGCTGCAAGGGGGTAA # Right flank : TGGCCGGCGACGGCCGGCCATCCCGAGGGAGCGCAGCGAGCCGAGGGACCTCGTCCGGCCGGGCAATCCGATGAGGGGCGCGCGTTTTTGCTTGGGAGATCCCGCGCCTCCCGTGGAGGCTTCGCAGTGAAGTGCGGACGCTACCCGATTGTCCACGCGGCCAGGGGCGGAAAGGGAGCGCCCGGTCTGGCACCGTCACAGCAGCCAGAAGTCCTGGTCCTCGGCCAGCGGCGTGCCGGTGCCGTGCACGGCGCAATGCGGTCGGCCGTCGGCCGATACCGCATAGACGCGCAAGGAATCCCCGCCCTCCAGGTGAACCGCCGCCTCCCGCGCCAGCCGGTCGGCACGCGACGGCGTCATGCGGGCCTCGAACACGCTCTTCTGCACCCGCGTGGCGTGGTCCTCCAGCACCGCCGCCACCCGCCGCCGCGCCGCCGCGCGGGCGATGTCGTAGCAGAACACCATCAGCATCTCGGTGCGGCTCACCGTCCCGTCCTCCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAACACCCTTCCGCTTATCCACGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 18711-19459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGI010000007.1 Roseospira goensis strain JA135 Ga0394285_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 18711 37 100.0 35 ..................................... TCCGGCCGGCAGGCCGAATCCACCGGGCACCCCGC 18783 37 100.0 33 ..................................... CTACGGCTTGTGATCCCCGCTTCTTCTGCCATT 18853 37 100.0 33 ..................................... AGAATGCCGACCGACGCGATGGTCCCAATCGAC 18923 37 100.0 35 ..................................... ATCGCACCGCGAGGTCGCCGGGAGGCACTGAATCG 18995 37 100.0 34 ..................................... TTCATCTCGGCATCCCAGCCGCCGAGAAAGAACT 19066 37 100.0 32 ..................................... CATCGCCATTGTCGGCGAGGCGGACAGCCGCG 19135 37 100.0 35 ..................................... TTCTTCTTGTGGCGTTGCATCGCCACGTGCTCCTC 19207 37 100.0 36 ..................................... CAAGCTTTGCAGCCAGTAGAGGAGCGCATCCCAAAA 19280 37 100.0 34 ..................................... TTGTCGATGAACCGCAGTCCGATCCGCCGGGTAT 19351 37 100.0 35 ..................................... AACTGCGTCACTGCATCACTAATCGCCGCAGACAC 19423 37 70.3 0 ......T...T........ATA..A......C.GGCG | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 97.3 34 GGTGAACACCCTTCCGCTTGACCACGCGGACTGAAAC # Left flank : CCGCCGCAACGGCCCGGGGGCGTAGCTGCCGTCGCGCAGGGCCTTGTGAAGGCTCAACAGGCGCACGGCGGCCCCGTCGTCGAACTGCGTGACGGTCAGGCCGTCGCCCCCCGCCGCGCCGGCGTTGGCCCGCACCCGATGCCAGGCGCGTTCCAGGCTGTCCAGCCGCGTCGCGGCGTCGTACAGTGCGTGACGGGCCGGCCGGCGATCGGACGGGCGGGAGGCTCGGGGTGCCATGGGGCCGCTCTCCGGAGGCGGCGGGCGCGGCGCGGGATCGGAAACCGGGCGACGGAAAGGATGGCCCCGGTCGCGCCACACCGATCTTTGGTTTGGTTTCCGTATATCAGTGGAAAGGGCGGAAGGCAATGATCGCATTGATGAATCGGCGTCCACAGCAAGCGCGATCAACCCAAGGGTGTTTTTGTTCGCCTTTTGCGTGTTCTATCAGTGGAAACCGGGGGGTGAAATTCGGCCTTGCGCAAACCCTTGCGAGGGGGTGG # Right flank : GCCGGCGCCGCCCCACCCGAGCCCACCGACCCACGCCCTCTGATTGCACTCCGACCCGCCCCGCCGTTATGCTGTCGTCCGCATCAGGGGGCAGCCGGAGGGCGGCGATGGAGGGCTCGGACGCGCGGTGGACCACCCACCCCAACCGTCTGCGACAGCGATTGGCGGCGCCGCTCGACCACGCCACGGCGGACGACCTGCTCGCCCGCTGGTTCCAGGCCGAAATCGTGGCGCGGCTCGGCCCCGGTCTGAGCCCGGATCGGATCACCGACCCGCGCCTTCCCGGCCGCCTGCGCGGCGCCCTGGGCGACGCCCTGCTGGAAGGCGCCAGCGCCGAGGCCCGCGCGGAACAACCCTGCCCGTGGGATCCGCCCTGCGCGCTGGACGTGCTGTGGGGCGAGACCGGCAGCGTGCGCCGGGGCGTGGAGATCCCGCGCCCGTTCGTGATCCGCGTCGATCCCGATCCGCCGGACGGCGGCCGCGTCACCCTGTCGCTGTTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAACACCCTTCCGCTTGACCACGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //