Array 1 113141-111526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTX010000004.1 Corynebacterium diphtheriae strain 05-14 NODE_4_length_223017_cov_49.685760, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113140 29 100.0 32 ............................. GCTCATCGGTGAGCAGCGCGGAGTAGAAGTTA 113079 29 96.6 32 ............................G CTGATCGTCGAACTCAAGGGCGCGTTCGCCCG 113018 29 100.0 32 ............................. AGCCGCGGCGTTACGCCCCTCGATCAAAAGAT 112957 29 100.0 32 ............................. AATTCCATCGAATTTATGTCAATTGTGTGTTG 112896 29 96.6 32 ............................G TTTGCCGCCGAATGAATCCGCGCTTGCGATTG 112835 29 100.0 32 ............................. GATCCCTGAGCGATTTGCGATCGCATTAACCG 112774 29 100.0 32 ............................. CGTCTCGACGAACAACGCGCAAACCATAGCCG 112713 29 93.1 32 ...............A............T CGCCCGTGGGGTCTGGCTATAAAGGCCACAAA 112652 29 93.1 32 .................A..........G ACCAATCGCGGCAGTAATAGGCGATGTGAAGC 112591 29 96.6 32 ............................G TTCGATCGAAAGCACATTGACTTTGCCGACGA 112530 29 96.6 32 ............................G TTGCTAGGCTACCGTTTCTACACGTGGTATGA 112469 29 100.0 32 ............................. CAGAACATTTGCGACGATCTGAGCTTTTGCGA 112408 29 100.0 32 ............................. GTCACCCCTGAAACTGTAATAGCGTGGCTGAA 112347 29 96.6 32 ............................G CGATGATGTTTGAGCTGCGTTCACAAATGGAG 112286 29 100.0 32 ............................. TCAACAGTGAAACGCGCCGGACAGGTACATAC 112225 29 100.0 32 ............................. CCACGTATCGCAGTGGCTATCTCACACCGTGC 112164 29 100.0 32 ............................. CAGAACATTTGCGACGATCTGAGCTTTTGCGA 112103 29 100.0 32 ............................. GGGCGTTCGAGGATTTTGGATATGATATGGGA 112042 29 96.6 32 .............T............... GCCACGACAATTACAGAAGGGGCGTGGACAGA 111981 29 96.6 32 .............T............... CACTGATACCACCCTCGCAAAGAAACACCCCG 111920 29 96.6 32 .............T............... TGTATCCTTAGGGGACACTGACCTTGCTCGCA 111859 29 96.6 32 .............T............... AAAAGGGCTGCGAGTAGGGTTAGCGCGTCATT 111798 29 96.6 32 .............T............... TCAAGTAGATAATCACACCAGCTGGTGTCGGC 111737 29 93.1 32 .............T..............T CTGGCGCTCGTCTGCCAGGTCTGCAATCATGA 111676 29 93.1 32 .............T..............G CGCGGATTCATTCGGCGGCAAACTTTCCGTGG 111615 29 96.6 32 .............T............... TCTTGCGGAAGCGTATCCACGCTAGACCGTCT 111554 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 97.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATACAGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGCGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : GTTTTCCCCGCACTAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //